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Detailed information on CNT30544072


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Brassica napusEucalyptus grandis26.8228.2290.1281reverse complement
CNT30547627Brassica napusIpomoea triloba23.186.929070reverse complement
CNT30515285Brassica napusJuglans regia27.8111.188.184forward
CNT30372997Brassica napusArabidopsis thaliana97.6840.6991.19295forward
CNT30501219Brassica napusCoffea canephora26.8225.5586.4281reverse complement
CNT30618136Brassica napusSesamum indicum23.5112.4891.5571reverse complement
CNT30381752Brassica napusManihot esculenta26.4926.1488.7580forward
CNT30526259Brassica napusPhaseolus vulgaris26.1625.988.6179forward
CNT30711674Brassica napusGlycine max24.1724.0191.7873forward
CNT30158859Brassica napusPistacia vera26.1627.5388.6179reverse complement
CNT30561829Brassica napusActinidia chinensis27.8123.5391.6784forward
CNT3059454Brassica napusArabidopsis lyrata97.6897.3690.51295forward
CNT30264180Brassica napusBrassica rapa10010099.01302forward
CNT30647270Brassica napusRosa chinensis27.4827.0495.1883forward
CNT30128358Brassica napusCorymbia citriodora20.5322.4690.3262reverse complement
CNT30153271Brassica napusPrunus persica23.8423.7691.6772forward
CNT30706625Brassica napusPrunus avium26.494.1887.580forward
CNT30644641Brassica napusCannabis sativa26.8221.7792.5981forward
CNT3024632Brassica napusPopulus trichocarpa26.1626.0791.1479forward
CNT30120686Brassica napusCitrus clementina35.135.2287.74106reverse complement

Expression of CNT30544072

Peptides detected in this lncRNA

>peptide 1 (40 aa)
SSSVAGACDPCGDNKMMEHWPGPQVGSVVACSGLPSPSRE*

>peptide 2 (40 aa)
MREAGFTEQRSPPSLGSGRITAQSHSDPAWPGGSYPAEPSS

Sequence

>CNT30544072
GTCGAGCTCAGTAGCGGGGGCTTGTGACCCATGTGGGGACAATAAGATGATGGAACACTGGCCCGGCCCACAGGTCGGATCTGTTGTGGCATGTTCTGGG
CTGCCCAGTCCAAGCCGAGAGTGACCCGTGTGTGTTGAGCGAAGGCTTGGCTCAGGCGGTTCCTAAAGTGGAGGGCAATGCGTGAGGCTGGTTTCACAGA
GCAGCGATCACCTCCCTCTCTCGGCAGTGGACGGATAACGGCTCAAAGCCACTCAGATCCAGCATGGCCTGGTGGCTCGTACCCAGCTGAACCATCATCT
TT