CANTATAdb - search

Detailed information on CNT3069056

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30535409	Quercus suber	Eucalyptus grandis	6.91	25.44	91.78	73	reverse complement
CNT30547454	Quercus suber	Ipomoea triloba	6.81	21.95	90.28	72	forward
CNT30703316	Quercus suber	Quercus lobata	28	96.42	95.27	296	forward
CNT30501219	Quercus suber	Coffea canephora	7.66	25.55	86.42	81	reverse complement
CNT30272829	Quercus suber	Chenopodium quinoa	6.91	23.78	90.41	73	forward
CNT30727469	Quercus suber	Corchorus capsularis	13.25	46.05	88.57	140	forward
CNT30379183	Quercus suber	Manihot esculenta	13.06	48.59	84.06	138	reverse complement
CNT30404033	Quercus suber	Beta vulgaris	12.58	43.04	84.21	133	forward
CNT30526253	Quercus suber	Phaseolus vulgaris	12.49	43.42	87.12	132	forward
CNT30629861	Quercus suber	Vigna unguiculata	13.06	29.11	84.78	138	forward
CNT30506771	Quercus suber	Nicotiana attenuata	6.53	22.62	89.86	69	forward
CNT30711188	Quercus suber	Glycine max	13.06	45.39	86.23	138	forward
CNT3044357	Quercus suber	Prunus dulcis	6.72	23.36	92.96	71	forward
CNT30158859	Quercus suber	Pistacia vera	9.27	34.15	86.73	98	reverse complement
CNT3095958	Quercus suber	Solanum tuberosum	5.96	20.79	90.48	63	forward
CNT30563209	Quercus suber	Actinidia chinensis	12.77	40.18	86.67	135	reverse complement
CNT30587366	Quercus suber	Musa acuminata	7.28	20.64	90.91	77	forward
CNT3087060	Quercus suber	Vigna radiata	13.15	46.03	86.33	139	forward
CNT30542706	Quercus suber	Brassica napus	7.85	27.39	90.36	83	forward
CNT30238127	Quercus suber	Brassica oleracea	6.62	22.95	91.43	70	forward
CNT30172422	Quercus suber	Trifolium pratense	12.2	40.82	85.27	129	forward
CNT30145967	Quercus suber	Medicago truncatula	13.06	46.94	83.33	138	forward
CNT3059454	Quercus suber	Arabidopsis lyrata	6.53	22.77	89.86	69	forward
CNT30262244	Quercus suber	Brassica rapa	7.85	27.39	90.36	83	forward
CNT30612441	Quercus suber	Arabis alpina	13.15	45.13	82.01	139	reverse complement
CNT30648233	Quercus suber	Rosa chinensis	6.72	23.13	92.96	71	forward
CNT30213027	Quercus suber	Helianthus annuus	13.43	45.95	84.51	142	forward
CNT30128358	Quercus suber	Corymbia citriodora	13.81	52.9	82.88	146	reverse complement
CNT30714975	Quercus suber	Malus domestica golden	6.72	23.83	94.37	71	reverse complement
CNT30477933	Quercus suber	Arabidopsis halleri	6.53	22.77	89.86	69	forward
CNT30361740	Quercus suber	Sorghum bicolor	6.05	20.98	90.62	64	forward
CNT30619930	Quercus suber	Cajanus cajan	12.77	22.46	82.22	135	forward
CNT30153271	Quercus suber	Prunus persica	6.72	23.43	91.55	71	forward
CNT30410045	Quercus suber	Papaver somniferum	7	25	89.19	74	reverse complement
CNT30572452	Quercus suber	Vitis vinifera	8.7	23.65	86.96	92	reverse complement
CNT30644781	Quercus suber	Cannabis sativa	7.57	34.33	90	80	reverse complement
CNT3026903	Quercus suber	Populus trichocarpa	7.19	25	92.11	76	forward
CNT30318989	Quercus suber	Asparagus officinalis	7.66	24.62	88.89	81	forward
CNT30174907	Quercus suber	Vigna angularis	13.06	45.25	86.96	138	forward
CNT30724529	Quercus suber	Lupinus angustifolius	12.49	43.28	84.85	132	forward

Expression of CNT3069056

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MYNFKLPCVQSITGFVSKFRVISIHISHTYQSYLKSFHNFKCSPPY*

>peptide 2 (34 aa)
MILIFFFFEKLWELFNRSAALMGMPLWFLRTLLH*

>peptide 3 (32 aa)
MYLYHSSTEKIVTNNQNFNSPGTTCALVHRAG*

Sequence

>CNT3069056
TCTAACTCCTTGAGTTTCATCCACTAAAGCAGACACAGTTGAGAACGTTCTTATCCATGCTTTCAAGCAATCATCCACATAACTTCTCACCACTACCGCA
ATGTGCCATTACCATTTAACCAAGCAACATCAACATTTGCTTTCTACCAAAAATATGGTCTTTCCCACTGGAGCTGTTTAGAAGTTTGTTTGCAAAGTTA
GGTATTCAAAGCCATATGTATAACTTCAAGCTTCCATGTGTGCAGAGCATCACTGGATTCGTCTCAAAATTCCGGGTCATTAGCATACACATCTCGCATA
CCTATCAAAGCTATTTGAAATCATTTCACAACTTCAAGTGTTCTCCTCCGTATTAAAGTAGCTCAGATTTTAACCATGCAGTGTAATCCTGTAACAATCT
GATGAGAAATAATGTATCTTTACCATTCAAGCACAGAAAAAATTGTCACAAACAACCAAAATTTCAATAGTCCAGGTACCACGTGCGCCCTAGTGCACCG
AGCTGGGTAGCGCTGGCTTGTAACTCGAGCGAGGGTATCAAAGAGGTGGAACAATGATTGGACTCACTTGGTAGGGTCAGTAGGCACAGGTTCCTGGTTC
GCCCGTTCCAAGTTGAGAGTTGAACCGTGTGACTTGGGCGAAGGCCTGGGTCTTGTGGTTCCTAGCGTGGAGGGCACAGCGTGAGGCTGGTTTCACAGAG
CAGCGAAAACCTCCCTCTCTCAACAGTGGAAGGATAACGAGCTGGTGTGCTTCTGAACCCAAATTGCCTAGTGAGTCGGGTTCGATTGAACCATGTCTTT
TTATTTTTTTAATCTTTTGAATTTTCAATGATCCTAATTTTTTTCTTTTTTGAGAAACTATGGGAATTATTCAATAGGTCTGCTGCATTAATGGGAATGC
CACTCTGGTTTCTGCGAACTCTACTGCATTAATGAGACACGCATTTGCATAAAAGAATTATTTACCACGAAATAGGATTTAAACATGTACCAAATGCAAC
ATGTAATTTATCTAACTTTTCTTTACTTTTTTAATCACCATTAACTTATGAATTGCC