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Detailed information on CNT30677458


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522256Setaria viridisSetaria italica63.6458.33100273forward
CNT30524746Setaria viridisPhaseolus vulgaris23.5411.1784.16101forward
CNT30628432Setaria viridisVigna unguiculata3820.183.44163forward
CNT30708635Setaria viridisGlycine max23.5417.7583.17101forward
CNT30296934Setaria viridisTriticum aestivum43.3634.5794.62186forward
CNT30392788Setaria viridisTriticum turgidum43.3614.2994.62186forward
CNT30586176Setaria viridisMusa acuminata40.3328.3687.86173forward
CNT3084527Setaria viridisVigna radiata3811.0184.05163forward
CNT30242094Setaria viridisAvena sativa41.2648.191.53177forward
CNT30136463Setaria viridisLolium perenne41.2624.1592.09177forward
CNT301194Setaria viridisZea mays42.8936.8795.11184forward
CNT30229564Setaria viridisAnanas comosus3823.7385.89163forward
CNT30620034Setaria viridisCajanus cajan38.9315.8982.04167forward
CNT3057351Setaria viridisAmborella trichopoda42.6621.583.06183forward
CNT30579294Setaria viridisEchinochloa crusgalli42.4225.3894.51182forward
CNT3050792Setaria viridisCucumis sativus39.3916.9379.88169forward

Expression of CNT30677458

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MTPARPPPMRGPTQYTHWYPQDQLTRAGPKDTAGFMDAPAKAWAIAAAIRPVGVEPP

>peptide 2 (51 aa)
MQSTRCEKTNQTAASTDQTDGTGRCARRRRRRLPKPQLSSRWWVAARGCGR*

>peptide 3 (37 aa)
DATDRSKPCERAQRRSSVHDYTVMMMGGDAKHAMREN*

Sequence

>CNT30677458
TGATGCGACTGATCGAAGCAAACCATGCGAGCGGGCGCAGCGGCGGAGTTCGGTTCATGACTACACGGTGATGATGATGGGCGGCGATGCAAAGCACGCG
ATGCGAGAAAACTAATCAAACGGCGGCGAGCACTGATCAAACGGACGGAACCGGCCGCTGCGCGCGACGTCGTCGACGGCGGCTACCGAAGCCTCAGCTT
AGTAGTCGGTGGTGGGTAGCTGCTCGTGGGTGTGGGAGATGAAGAGCACCTCGTAGATGACGCCGGCGAGGCCGCCGCCGATGAGAGGGCCGACCCAGTA
CACCCACTGGTATCCCCAGGACCAGCTGACGAGGGCGGGGCCGAAGGACACGGCGGGGTTCATGGACGCGCCGGCGAAGGCGTGGGCAATAGCCGCGGCG
ATCAGGCCCGTGGGGGTCGAGCCGCCGGG