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Detailed information on CNT3050792


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 4e-78

BLAST vs NONCODE:
NONGMAT001209, E-value = 2e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677458Cucumis sativusSetaria viridis16.9339.3979.88169forward
CNT30513779Cucumis sativusJuglans regia24.1554.479.25241forward
CNT30373597Cucumis sativusArabidopsis thaliana33.0753.0581.52330forward
CNT30727223Cucumis sativusCorchorus capsularis21.8415.5483.49218forward
CNT30524746Cucumis sativusPhaseolus vulgaris31.4634.7380.25314forward
CNT30503966Cucumis sativusNicotiana attenuata8.1222.0183.9581forward
CNT30708629Cucumis sativusGlycine max19.7447.782.74197forward
CNT30223457Cucumis sativusHordeum vulgare14.1347.3283.69141forward
CNT30586176Cucumis sativusMusa acuminata17.8429.1879.21178forward
CNT3084637Cucumis sativusVigna radiata31.4627.2881.85314forward
CNT30552975Cucumis sativusOryza glaberrima13.8323.7980.43138forward
CNT30310223Cucumis sativusCamelina sativa15.2323.2184.87152forward
CNT30260230Cucumis sativusBrassica rapa7.4125.9685.1474forward
CNT30612524Cucumis sativusArabis alpina17.0366.4182.35170forward
CNT30623609Cucumis sativusDaucus carota18.2432.3881.32182forward
CNT30619934Cucumis sativusCajanus cajan12.0223.3587.5120forward
CNT30423736Cucumis sativusPapaver somniferum20.0424.4582.5200forward
CNT30643380Cucumis sativusCannabis sativa11.3223.9984.96113forward
CNT3031788Cucumis sativusTheobroma cacao17.0323.7481.76170forward
CNT3057351Cucumis sativusAmborella trichopoda33.0738.7881.52330forward
CNT30113848Cucumis sativusFicus carica31.0640.1680310forward

Expression of CNT3050792

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MMMMIKSCKDPTLTNETRPNPSDKRNLTKPNTPD*

>peptide 2 (66 aa)
MGDGGGDETSWSGSAVIGELIKGYAGTLASKNKNQGGDKLSQSSLQSIWMSSLFGPSNCNVTDRHG*

>peptide 3 (66 aa)
MIPRRRVMLPPTKAPKAWAMEAEMRPAGVAAPSLVSLLKAMPEPWPAKTKIKVEINSANPAFKASG*

>peptide 4 (77 aa)
MEAPVNAPPAKMLAPTMKPIAMGAIVPKLPFLGSTAVAYTVYTNPNVMTISKTKAFSSPTPADRAKLPLSNPVDDTT*

Sequence

>CNT3050792
TAAAAGACTTTAAAAATAAATCACGTACAGACAGGAGCAGAATAACATAAATTACAACCTGGCCCTGATTTTCTTTCATCTTCAATCAAATCATCGCAGA
GTCCAGACACGGCACTCAACGACGACTACAAAGATGATGATGATGATCAAATCATGTAAAGATCCAACGCTCACAAATGAGACACGACCAAACCCATCCG
ATAAAAGAAACTTAACAAAACCAAATACACCAGATTAAAAAGAAAAGAAAAGAGTGGCCGCCGTCGCTGCCGCGTCCGCCGTGGGTGGTGGTGGTGCTTG
ACTTAGTAGTCGGTGGTTGGGAGTTGCTCGTGGGAGTTGGAGATGAAGATGAATTCGTAGATGAGACCAGCAAGGCCACCACCGATCAAAGGCCCGGCCC
AGTAGATCCAGTGGCTTTCCCATGACCAGCTCACGACTGATGGGCCGAATGCGACGGCGGGGTTCATGGAGGCTCCGGTGAATGCTCCACCGGCCAAAAT
GTTGGCTCCGACGATGAAACCGATTGCGATGGGTGCAATTGTTCCCAAACTGCCCTTCTTGGGATCCACTGCGGTCGCGTACACCGTGTACACCAATCCG
AATGTCATGACGATCTCGAAAACGAAGGCGTTCAGTTCACCAACTCCTGCTGATAGAGCGAAGCTTCCGTTGAGCAATCCAGTAGATGATACCACGTAGA
AGGGTGATGTTACCGCCAACGAAGGCACCAAAGGCATGGGCGATGGAGGCGGAGATGAGACCAGCTGGAGTGGCAGCGCCGTCATTGGTGAGCTTATTAA
AGGCTATGCCGGAACCTTGGCCAGCAAAAACAAAAATCAAGGTGGAGATAAACTCAGCCAATCCAGCCTTCAAAGCATCTGGATGAGTAGCCTCTTCGGG
CCTTCCAATTGCAATGTTACGGATCGGCATGGCTAGTAATAATTAGAGAACTTTAAAATGAAAATTCTTTAGAATTAATTGTAGTTTGTAGTACTCCA