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Detailed information on CNT30254829


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 7e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Avena sativaSetaria viridis38.7943.5894.91275forward
CNT30521445Avena sativaSetaria italica57.444.6893.12407forward
CNT30727261Avena sativaCorchorus capsularis21.327.1180.79151forward
CNT30553963Avena sativaOryza glaberrima26.3826.691.98187forward
CNT30443527Avena sativaAegilops tauschii57.5574.4594.61408forward
CNT30142178Avena sativaLolium perenne69.6876.3587.04494forward
CNT30369235Avena sativaOryza glumipatula23.9815.0787.06170forward
CNT30644098Avena sativaCannabis sativa20.7352.583.67147forward
CNT3057351Avena sativaAmborella trichopoda23.9819.9880170forward
CNT30101968Avena sativaOryza rufipogon52.7549.2193.32374forward
CNT30576737Avena sativaOryza barthii17.7728.9793.65126forward
CNT30583061Avena sativaEchinochloa crusgalli20.0326.0188.73142forward

Expression of CNT30254829

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLAPMATATKSPNPWQSATATSPEGSSGAPPLTL

>peptide 2 (46 aa)
MIDSATGQEHTLEFVTWLWLSSRWRRPCGRRTCTGTGRRRRRGHRR*

>peptide 3 (59 aa)
MLVKSPLATAGPKERAGFMDPPEKGPATRMLAPTMKPMAMGAMVPRDPFLGSAAVAYTV*

Sequence

>CNT30254829
CGCATAAAGAAACTCAACTGAAGAATTCTGAAACCCTGACAAGTTCACAACATCCACCACATTACAGATAGAGAAACATGCATCATCCACAGCCTCGCAG
GGCTTCGATCTGATCCTGAACCAAACAACACGACCATCTTCGCATCAGTTCGTGACACTGACCACCACTTACGCGCGCACCTTTTATGTTGCCAACATTA
CGGAAACCAAACAACGATCGATGATAGACAGTGCGACTGGGCAGGAGCACACCCTTGAATTCGTCACCTGGCTCTGGCTTAGTAGTCGCTGGAGACGGCC
GTGTGGTCGTCGCACATGTACAGGTACCGGTAGACGACGCCGGCGAGGCCACCGCCGATGAGCGGGCCGGCCCAGTAGATCCAGATGTTGGTGAAGTCGC
CGCTGGCCACGGCGGGGCCGAAGGAGCGAGCAGGGTTCATGGACCCGCCGGAGAAGGGGCCGGCGACGAGGATGTTGGCGCCGACGATGAAGCCGATGGC
GATGGGGGCGATGGTGCCGAGGGACCCCTTCTTGGGGTCGGCGGCGGTGGCGTACACGGTGTAGACCAGGCCGAAGGTGACGGCGGGGTTGACGTGGCCG
CCGGAGATGTTGGCACCGATGGCGACCGCGACGAAGAGCCCGAACCCGTGGCAAAGCGCCACGGCAACCAGCCCGGAAGGATCAAGTGGAGCGCCGCCGC
TCACCTTGG