Detailed information on CNT30518137


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 5e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698182Juglans regiaQuercus lobata25.0825.2481.65158forward
CNT30708635Juglans regiaGlycine max38.4142.5378.51242forward
CNT30146734Juglans regiaMedicago truncatula28.2528.879.21178forward
CNT30623609Juglans regiaDaucus carota37.7842.3581.51238forward
CNT30369235Juglans regiaOryza glumipatula28.8916.1379.12182forward
CNT30423736Juglans regiaPapaver somniferum20.7916.0183.21131forward
CNT3057351Juglans regiaAmborella trichopoda32.3823.9778.43204forward

Expression of CNT30518137

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MDAPSKAPPARMLAPTTRPIAMGAMIPMFPFFGSKAVAYTVYTNPKVITISNTKAFHTLTSDDRVKAGVD

>peptide 2 (35 aa)
MDTTHQNDCRNTGQSSQESTINKIQTKHQNTHPHC*

>peptide 3 (49 aa)
MIAGIQDRVHKNQQLTRYRQNIKTPTHIAETKIKQPDIQVSNPFKLKIE*

>peptide 4 (32 aa)
MGVWANEEDLVHDGGDGRADEGTDPIDPVVCP*

Sequence

>CNT30518137
TTAGATCTAAAAGACTTGTCAAATTCAAAGGCTGAACAAGAAAACTTCTTAAAAGTGAGTACAAATGGACACTACTCATCAAAATGATTGCAGGAATACA
GGACAGAGTTCACAAGAATCAACAATTAACAAGATACAGACAAAACATCAAAACACCCACCCACATTGCTGAAACCAAAATAAAACAGCCAGACATCCAA
GTTTCCAACCCTTTTAAACTGAAAATAGAATGAAGAAAGAGATGATGATACTACTTAGAAATCAGTGGGGGGGAGTGGCTCATGGGTGTTTGGGCTAATG
AAGAAGATCTCGTACACGACGGCGGCGATGGCAGAGCCGATGAGGGGACCGACCCAATAGACCCAGTGGTTTGTCCATGACCAACTGACCACAGCAGGGC
CAAAGGAGACAGCTGGGTTCATGGATGCACCTTCGAAGGCACCACCGGCTAGAATGTTGGCGCCAACTACGAGACCAATTGCAATGGGTGCGATGATACC
AATGTTTCCATTCTTTGGGTCCAAGGCTGTGGCATACACCGTGTACACCAACCCGAAGGTCATCACTATCTCGAACACTAAGGCATTCCATACACTCACA
TCAGATGATAGAGTGAAGGCTGGTGTTGAC