Detailed information on CNT30521388


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 2e-95

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376051Setaria italicaArabidopsis thaliana21.8416.9580.43138forward
CNT30618329Setaria italicaSesamum indicum22.7811.6881.94144forward
CNT30727261Setaria italicaCorchorus capsularis19.321.981.15122forward
CNT30553963Setaria italicaOryza glaberrima33.8630.4493.93214forward
CNT30256642Setaria italicaAvena sativa65.8280.7889.66416forward
CNT30142178Setaria italicaLolium perenne34.1833.3891.67216forward
CNT301194Setaria italicaZea mays20.4125.8585.27129forward
CNT30722694Setaria italicaTriticum spelta24.0523.6894.08152forward
CNT30352266Setaria italicaEragrostis tef27.2232.4590.12172forward
CNT30370544Setaria italicaOryza glumipatula22.7817.0295.83144forward
CNT3057351Setaria italicaAmborella trichopoda26.1119.3980.61165forward
CNT3022241Setaria italicaPopulus trichocarpa21.213.7782.84134forward
CNT30576737Setaria italicaOryza barthii21.5231.2695.59136forward
CNT30583061Setaria italicaEchinochloa crusgalli27.2231.594.77172forward

Expression of CNT30521388

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MVIWPPRARPKVTAGFTWPPEMLAPMATATNSPNPWHTATATRPAASRGAP

>peptide 2 (42 aa)
ANQSSKRTHTASGALIRTKQRHAAMDAAHHSLNLTLCGQHYD*

>peptide 3 (97 aa)
GQPIIQAHAHSLRGFDPNQTTTCCNGCCSSQPESHFMRPTLRLRETKQQCTATVTRRALRSRCWRRGRGRRTCRCTGRRCRRGLRRQAGRPSRSRCW*

>peptide 4 (59 aa)
MLVKSPLATAGPKERAGFMDPPEKGPATRMLAPTMKPMAMGAMVPREPFLGSAAVAYTV*

Sequence

>CNT30521388
GGCCAACCAATCATCCAAGCGCACGCACACAGCCTCCGGGGCTTTGATCCGAACCAAACAACGACATGCTGCAATGGATGCTGCTCATCACAGCCTGAAT
CTCACTTTATGCGGCCAACACTACGATTGAGAGAAACCAAACAACAATGCACGGCGACGGTCACTCGGCGCGCGCTTAGAAGTCGCTGCTGGCGACGGGG
GCGTGGTCGCCGCACATGTAGATGTACCGGTAGACGATGCCGGCGAGGCCTCCGCCGACAAGCGGGCCGACCCAGTAGATCCAGATGTTGGTGAAGTCGC
CGCTGGCCACGGCGGGGCCGAAGGAGCGGGCCGGGTTCATGGACCCGCCGGAGAAGGGGCCGGCGACGAGGATGTTGGCGCCGACGATGAAGCCGATGGC
GATGGGCGCGATGGTGCCGAGGGAGCCCTTCTTGGGGTCGGCCGCGGTGGCGTACACGGTGTAGACGAGGCCGGTGAGGATGGTGATCTGGCCGCCGAGG
GCGAGGCCGAAGGTGACGGCGGGGTTCACGTGGCCGCCGGAGATGTTGGCGCCGATGGCGACCGCGACGAACAGCCCGAACCCGTGGCACACCGCCACGG
CGACCAGGCCGGCCGCGTCAAGAGGCGCGCCG