Detailed information on CNT30708635


BLAST search results

BLAST vs Swiss-Prot:
sp|P42067|TIP1_MEDSA, E-value = 5e-65

BLAST vs NONCODE:
NONGMAT001209, E-value = 2e-126

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677458Glycine maxSetaria viridis17.7523.5483.17101forward
CNT30518137Glycine maxJuglans regia42.5338.4178.51242forward
CNT30698182Glycine maxQuercus lobata20.3918.5382.76116forward
CNT30373597Glycine maxArabidopsis thaliana57.6452.7380.79328forward
CNT30618329Glycine maxSesamum indicum43.4120.0379.35247forward
CNT30727223Glycine maxCorchorus capsularis52.0221.181.76296forward
CNT30524746Glycine maxPhaseolus vulgaris65.3841.1589.52372forward
CNT30503973Glycine maxNicotiana attenuata27.4222.8480.77156forward
CNT30635699Glycine maxCapsicum annuum22.145.6984.13126forward
CNT3093986Glycine maxSolanum tuberosum21.096.9283.33120forward
CNT3084637Glycine maxVigna radiata61.3430.3289.4349forward
CNT30509931Glycine maxSolanum lycopersicum21.096.2581.67120forward
CNT30146734Glycine maxMedicago truncatula48.8644.9885.61278forward
CNT30310654Glycine maxCamelina sativa4260.8181.17239forward
CNT30623609Glycine maxDaucus carota41.6542.1780.17237forward
CNT30619934Glycine maxCajanus cajan32.8636.3890.91187forward
CNT30423726Glycine maxPapaver somniferum39.1916.3680.72223forward
CNT30570838Glycine maxVitis vinifera36.9149.8881.9210forward
CNT30643380Glycine maxCannabis sativa17.9321.6689.22102forward
CNT3057351Glycine maxAmborella trichopoda5838.7877.58330forward
CNT30113848Glycine maxFicus carica52.5538.7382.27299forward

Expression of CNT30708635

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MIHTFNSIVDQERKHKGRKTIHRRRFRRNSIIHIFFFYYFIFPL*

>peptide 2 (38 aa)
MAAPEKAPPNKMLAPTMKPMAMGAIIPKLPFLGSTAVA*

Sequence

>CNT30708635
GGAACAGAGGATACCGGAAAAAGTAAGAAGTACTAGTGAAATGGTACAACCAACCAGACCCGAATAATGATACATACATTCAATTCAATTGTGGACCAGG
AAAGAAAACACAAAGGAAGGAAAACCATACACAGAAGAAGATTCCGGAGAAATTCAATAATACACATTTTTTTTTTTTATTATTTCATTTTTCCCCTCTA
GTAGTCAGTGCTGGGAAGCTGCTCGTGGGTGTGGCTGATGAAGACAACCTCGTAGATAAGCCCAGCAATTCCACCTCCGATGAGAGGGCCGGCCCAGTAG
ATCCAGTGGTTGGTCCAGGTCCAGCTCACGACAGCAGGCCCAAATGTCACAGCAGGGTTCATGGCTGCTCCGGAGAAGGCCCCACCCAACAAAATGTTAG
CGCCAACAATGAAACCAATGGCGATGGGAGCAATAATTCCCAAATTGCCCTTCTTGGGGTCAACGGCAGTGGCGTAGACTGTGTACACCAAACCGAAGGT
CATCACGATCTCCAACACCAAAGCGTTGCCAACTCCGACTCCAGCGGAAAGCCCGAATGCTGGAACAGG