Detailed information on CNT30579294


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94CS9|TIP12_ORYSJ, E-value = 4e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677458Echinochloa crusgalliSetaria viridis25.3842.4294.51182forward
CNT30513779Echinochloa crusgalliJuglans regia19.3931.3880.58139forward
CNT30296934Echinochloa crusgalliTriticum aestivum25.834.3996.22185forward
CNT30392788Echinochloa crusgalliTriticum turgidum31.9417.5996.07229forward
CNT3057351Echinochloa crusgalliAmborella trichopoda31.5226.5680.09226forward

Expression of CNT30579294

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRLRAAQQQSLGVTFHGGRCDAMQCKTKRRTG*

>peptide 2 (39 aa)
MIIKRTELNRLLLRRRRYRSLWQSSLSSRWWGAARGCWR*

>peptide 3 (54 aa)
SKCTNFTEARSNSRRLQCSKLIDRSKPHAIASGAAAESGCYISWRSMRCNAMQN*

>peptide 4 (79 aa)
MDAPSKAPPTRMLAPTMKPMAMGAMPEPWPAKTKMRVEMNSANAALRAPGWYTSWWLPTAMLRIGIFAALELALDLTQL*

>peptide 5 (85 aa)
QMHKFYRSKIEFTAVTVFQTDRSKQTTCDCERRSSRVWVLHFMAVDAMQCNAKLNGGLDDNQTDGVEPASAAAEKVPEPLAELAQ*

Sequence

>CNT30579294
AGCAAATGCACAAATTTTACAGAAGCAAGATCGAATTCACGGCGGTTACAGTGTTCCAAACTGATCGATCGAAGCAAACCACATGCGATTGCGAGCGGCG
CAGCAGCAGAGTCTGGGTGTTACATTTCATGGCGGTCGATGCGATGCAATGCAATGCAAAACTAAACGGCGGACTGGATGATAATCAAACGGACGGAGTT
GAACCGGCTTCTGCTGCGGCGGAGAAGGTACCGGAGCCTCTGGCAGAGCTCGCTCAGTAGTCGGTGGTGGGGAGCTGCTCGTGGGTGCTGGAGATGAAGA
GCACCTCGTAGATGACGCCGGCGAGGCCGCCGCCGATGAGCGGGCCGACCCAGTAGACCCACTGGTACCCCCACTCCCAGCTGACGAGGGCGGGGCCGAA
GGACACGGCGGGGTTCATGGACGCGCCGTCGAAGGCGCCGCCAACCAGGATGTTGGCGCCGACGATGAAGCCGATGGCGATGGGGGCCATGCCGGAGCCC
TGGCCGGCGAAGACGAAGATGAGGGTGGAGATGAACTCAGCGAACGCCGCCTTGAGGGCACCCGGGTGGTACACCTCCTGGTGGCTCCCGACGGCGATGT
TACGGATCGGCATTTTCGCGGCCCTCGAGCTAGCTCTCGATCTCACTCAGCTCTAACCACAGCTAGGATCGAGGAGACTGTGCTTGGAGCTCGATGCGAT
GCGATGCGGTGGTGGTG