« Back to Ananas comosus search


Detailed information on CNT30229576


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Ananas comosusSetaria viridis23.3126.3185.54166forward
CNT30521445Ananas comosusSetaria italica23.4618.3385.63167forward
CNT30618329Ananas comosusSesamum indicum24.314.0381.5173forward
CNT30223457Ananas comosusHordeum vulgare21.2150.6787.42151forward
CNT30397893Ananas comosusTriticum turgidum23.0325.7585.37164forward
CNT30553179Ananas comosusOryza glaberrima21.3521.9788.82152forward
CNT30443527Ananas comosusAegilops tauschii20.5126.6486.99146forward
CNT30247019Ananas comosusAvena sativa27.3915.8784.62195forward
CNT30136463Ananas comosusLolium perenne24.5823.8787.43175forward
CNT301194Ananas comosusZea mays18.2626.0588.46130forward
CNT3066802Ananas comosusLeersia perrieri19.3858.2391.3138forward
CNT30623609Ananas comosusDaucus carota26.9734.1679.17192forward
CNT30596416Ananas comosusOryza meridionalis17.5627.5385.6125forward
CNT30369235Ananas comosusOryza glumipatula29.6318.7184.36211forward
CNT3057351Ananas comosusAmborella trichopoda27.9523.3881.91199forward
CNT30101982Ananas comosusOryza rufipogon18.424.0485.5131forward
CNT30576681Ananas comosusOryza barthii22.8928.0684.05163forward

Expression of CNT30229576

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MDAPVKAPPRRMLAPTMKPMAIGAMVPRLPRLGSMAVA*

>peptide 2 (37 aa)
SFFLKLFFPRFNRSSSRNSTQHYEQRAGVDDIDDDHE*

>peptide 3 (34 aa)
MTISITSASPAPTPDSPKVPVASPPVEKRSSRQAT

>peptide 4 (43 aa)
MHEIDSLRKNRKLTTSTACKDREFYAWKGGGLAGGCGVMIDDQ*

Sequence

>CNT30229576
CTCTTTTTTTTTAAAGCTCTTTTTTCCAAGGTTCAACAGAAGCAGCAGCAGAAACTCAACTCAGCATTATGAACAAAGAGCAGGAGTAGACGACATCGAC
GACGACCACGAATGATCGATCGGAAATAAAAGAAGATGACTGAGAAAGAAAGACTCGAAATCAATACACCACCACCACCGATCGAACAACAGAATTAAAC
CATGCACGAGATAGATTCATTAAGAAAAAACAGGAAATTAACGACGAGTACTGCATGCAAGGATCGAGAATTTTATGCATGGAAAGGAGGCGGCTTGGCT
GGGGGCTGTGGGGTGATGATCGATGATCAGTAGTCGGGCGGGGGGATCTGCTCGTAGTTGGGGGTGATGAAGAAGACGTCGTAGACGATGGCGGCGATGG
CGCCGCCAATGAGCGGGCCCAGGACCAGCTGACGAGCGCGGGCCCGAAGGACACGGCCGGGTTCATGGACGCCCCCGTGAAGGCGCCGCCCAGGAGGATG
TTGGCGCCGACTATGAAGCCGATGGCGATCGGGGCGATGGTGCCGAGGCTGCCCCGCTTGGGGTCGATGGCCGTGGCGTAGACGGTGTAGACGAGGCCGA
AGGTCATGACGATCTCCATCACCAGCGCCTCCCCCGCGCCCACGCCCGACAGCCCGAAGGTCCCCGTGGCCAGCCCGCCCGTCGAGAAGCGCAGCAGCAG
GCAGGCCACCGT