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Detailed information on CNT30101968


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 2e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Oryza rufipogonSetaria viridis39.7447.8694.37302forward
CNT30521445Oryza rufipogonSetaria italica55.2646.194.29420forward
CNT30727261Oryza rufipogonCorchorus capsularis19.8727.1180.13151forward
CNT30223457Oryza rufipogonHordeum vulgare19.3449.3392.52147forward
CNT30397893Oryza rufipogonTriticum turgidum26.4531.5595.02201forward
CNT30589165Oryza rufipogonMusa acuminata27.2445.289.37207forward
CNT30553963Oryza rufipogonOryza glaberrima72.8978.8198.92554forward
CNT30443527Oryza rufipogonAegilops tauschii51.7171.7291.86393forward
CNT30254829Oryza rufipogonAvena sativa49.2152.7593.32374forward
CNT30142178Oryza rufipogonLolium perenne24.6128.991.98187forward
CNT301194Oryza rufipogonZea mays24.8737.8881.48189forward
CNT3066802Oryza rufipogonLeersia perrieri18.9560.7688.19144forward
CNT30627409Oryza rufipogonDaucus carota19.6123.7380.54149forward
CNT30364799Oryza rufipogonSorghum bicolor20.9220.8993.08159forward
CNT30370544Oryza rufipogonOryza glumipatula60.2654.1499.34458forward
CNT30644098Oryza rufipogonCannabis sativa19.3452.582.31147forward
CNT3057351Oryza rufipogonAmborella trichopoda22.6320.2179.65172forward

Expression of CNT30101968

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MEPPEKGPATRMLAPTMKPMAMGAMVPSDPFLGSAAVAYTVYTSPKVTAGLTWPPEMLAPMATATNSPNPWHTATATSPAGSSGA

>peptide 2 (76 aa)
MAKWVIRTRCWQRGRGRRTCRRTGRRGRRGRRRRGGRPSRSRCWCSRRWRRRGRRSAPGSWSRRRRGRRRGCWRRR*

Sequence

>CNT30101968
CTGATTTCCTATTTGCGAGGAGAAGACACAAGCTTATTTTGGAGGCTACAAACAAACTGAAATGACATGGCCCGAATCAAATGAAATCTCACAATGAAAC
TCAACAGAAGTGTTCGATCTTAAACATGCATCTCATCCAACTTGCTCCACACTGATCACATTACAAATTAATCAAGAAGAAACTAAACATGGATCGATCA
TCACCCAAGTGTCACATCCTCGCAACAAAAGCCTTCTTCCCCATCTGAACCAAATCAGTCCTTCACAACACATCCTCACAAGATTCTGACGATGGAGTGA
CCACCATTTTTATGCGTGTTGCCGATGGCGAAATGGGTAATTAGAACTCGCTGCTGGCAACGGGGGCGTGGTCGCCGCACATGTAGACGTACCGGTAGAC
GAGGCCGGCGAGGCCGCCGCCGACGAGGGGGCCGACCCAGTAGATCCAGATGTTGGTGTAGTCGCCGCTGGCGACGGCGGGGCCGAAGGAGCGCGCCGGG
TTCATGGAGCCGCCGGAGAAGGGGCCGGCGACGAGGATGTTGGCGCCGACGATGAAGCCGATGGCGATGGGCGCGATGGTGCCGAGCGACCCCTTCTTGG
GGTCGGCGGCGGTGGCGTACACGGTGTACACCAGCCCGAAGGTGACGGCCGGGTTGACGTGGCCGCCGGAGATGTTGGCGCCGATGGCCACCGCCACGAA
CAGCCCGAACCCGTGGCACACCGCCACGGCGACCAGCCCGGCCGGGTCAAGCGGCGCGCC