Detailed information on CNT30334320


BLAST search results

BLAST vs Swiss-Prot:
sp|P25818|TIP11_ARATH, E-value = 3e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727223Cynara cardunculusCorchorus capsularis30.2216.6179.4233forward
CNT30708652Cynara cardunculusGlycine max9.9924.8485.7177forward
CNT30635699Cynara cardunculusCapsicum annuum27.639.6279.34213forward
CNT30623609Cynara cardunculusDaucus carota28.0238.4378.7216forward
CNT3057351Cynara cardunculusAmborella trichopoda34.531.2678.95266forward

Expression of CNT30334320

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MLAATTKPIANGAIVPISPFFGSIAVAYTVYTRPKVITISNTKALHTDSPAANEKPVLTKPPVEKNRSRQATTEPRSCAMM*

>peptide 2 (29 aa)
MHHQLKCWLPPLNQSPMVRLYRYRPFSGQ*

>peptide 3 (75 aa)
VFILLLDNFDIRSFNPKKLFFNKKDTKLHKKMRVQKTKVQRNSQRERGHNKNKRGHQRLFTSSSTRTMATTHESG*

>peptide 4 (46 aa)
MRAVNEDELIYGASEPPTDEWSSPVNPMASPVPANHGWPEGNGWVH*

Sequence

>CNT30334320
GTTTTTATTTTATTATTAGACAATTTTGATATTCGATCATTTAATCCCAAAAAATTATTTTTCAATAAAAAGGATACTAAATTACACAAGAAAATGCGAG
TACAAAAAACAAAGGTACAACGCAACTCACAAAGAGAAAGAGGACACAACAAGAATAAACGAGGGCATCAACGTCTTTTCACATCTTCTAGTACTCGGAC
GATGGCAACGACTCATGAGAGCGGTTAATGAAGATGAGCTCATATATGGCGCCAGCGAGCCCCCCACCGATGAGTGGTCCAGCCCAGTAAATCCAATGGC
TTCCCCAGTCCCAGCTAACCACGGCTGGCCCGAAGGCAACGGCTGGGTTCATTGATGCACCGGTGAATGCACCACCAGCTAAAATGTTGGCTGCCACCAC
TAAACCAATCGCCAATGGTGCGATTGTACCGATATCGCCCTTTTTCGGGTCAATAGCGGTGGCGTACACTGTGTACACGAGGCCAAAAGTCATCACGATC
TCGAACACGAAGGCGCTCCATACCGATAGTCCGGCGGCCAACGAGAAGCCGGTTCTTACCAAACCACCGGTGGAGAAAAATAGAAGCAGGCAAGCAACAA
CTGAGCCAAGGAGCTGTGCGATGATGTAAAAGATCCCACGGAGCAAGGTGACGGCAGGGTTGACATGGCCACCGGAGATATTAGCACCGACTGACACCGC
CACAAACAACCCAAAACCATGGGCAAGCGACGCCGCAACTAGACCGGCCGGAGAGGTCGGAGCACCGCCGG