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Detailed information on CNT30375250


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41963|TIP12_ARATH, E-value = 1e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618331Arabidopsis thalianaSesamum indicum31.7215.5683.21131forward
CNT30239005Arabidopsis thalianaBrassica oleracea58.624.2288.84242forward
CNT30260230Arabidopsis thalianaBrassica rapa15.7422.8193.8565forward
CNT30612709Arabidopsis thalianaArabis alpina30.2711.7592125forward
CNT30135940Arabidopsis thalianaLolium perenne30.2723.580.8125forward
CNT30423736Arabidopsis thalianaPapaver somniferum37.5318.9584.52155forward
CNT3057351Arabidopsis thalianaAmborella trichopoda40.1919.5180.72166forward
CNT30114821Arabidopsis thalianaEutrema salsugineum30.9912.2587.5128forward

Expression of CNT30375250

Peptides detected in this lncRNA

>peptide 1 (89 aa)
RLTTLNLTSSVIGGRQLLVGIFIDEDKVVDNSGESTTNKRTSPVNPVVGPRPAYDGWSESNGWVHGSSAESSTGEDVSSNDETYGDWCK*

>peptide 2 (46 aa)
MEAPLKAPPARMLAPTMKPMAIGVSDVTSPPVAKLRRKQAATEPRS*

Sequence

>CNT30375250
CAGATTAACAACGTTGAATTTGACGTCTTCAGTAATCGGTGGTAGGCAATTGCTCGTGGGCATTTTCATCGATGAAGACAAAGTCGTAGATAATTCCGGC
GAGTCCACCACCAATAAGAGGACCAGCCCAGTAAACCCAGTGGTTGGTCCACGTCCAGCTTACGACGGCTGGTCCGAAAGCAACGGCTGGGTTCATGGAA
GCTCCGCTGAAAGCTCCACCGGCGAGGATGTTAGCTCCAACGATGAAACCTATGGCGATTGGTGTAAGTGACGTTACCTCGCCACCGGTGGCAAAGCTAA
GGAGGAAACAAGCGGCGACGGAGCCAAGAAGCTGAGCAATCCAGTAGAGAATACCACGGAGGAGAGTGATGTTACCACCGAGTAAGACACCGAAGGTAAC
GGCAGGGTTAACG