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Detailed information on CNT30296934


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677458Triticum aestivumSetaria viridis34.5743.3694.62186forward
CNT30628528Triticum aestivumVigna unguiculata33.8320.5281.32182forward
CNT30392788Triticum aestivumTriticum turgidum59.8524.73100322forward
CNT30586176Triticum aestivumMusa acuminata32.1628.3685.55173forward
CNT3084543Triticum aestivumVigna radiata18.5926.3987100forward
CNT30242094Triticum aestivumAvena sativa32.948.195.48177forward
CNT30136463Triticum aestivumLolium perenne32.924.1594.35177forward
CNT301194Triticum aestivumZea mays34.7637.4796.79187forward
CNT30229564Triticum aestivumAnanas comosus35.6927.9583.33192forward
CNT3066802Triticum aestivumLeersia perrieri11.92792.1964forward
CNT30721484Triticum aestivumTriticum spelta68.9650.75100371forward
CNT3057351Triticum aestivumAmborella trichopoda34.5721.8683.87186forward
CNT30575580Triticum aestivumOryza barthii14.523.2896.1578forward
CNT30579294Triticum aestivumEchinochloa crusgalli34.3925.896.22185forward

Expression of CNT30296934

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MTPARPPPMRGPTQYTHWYPHSQLTRAGPKETAGFMDAPEKAPKVTAGFTCPPEMLAPTDTA

>peptide 2 (53 aa)
MHHGMRRPREKLKRLMTGRKGETKHHTDGWTATPILSSLLSSRWWGAARGCGR*

>peptide 3 (46 aa)
GRANSQFYRSKLTGSVIPDRDHPRFYSSTHAPQTDSTDRPIDGSQD*

>peptide 4 (34 aa)
RAGEFTVLQKQIDWVGHPRSRSSTLLQLHARTTN*

Sequence

>CNT30296934
CGGGCGGGCGAATTCACAGTTTTACAGAAGCAAATTGACTGGGTCGGTCATCCCAGATCGAGATCATCCACGCTTTTACAGCTCCACGCACGCACCACAA
ACTGACTCGACTGACCGACCGATCGACGGATCCCAGGACTGATTGATTCAAAGCAAACGAGGCGAGCTCCGCATACATGCATCATGGCATGCGGCGACCG
CGCGAGAAACTAAAACGACTGATGACGGGAAGGAAGGGGGAGACGAAGCATCACACGGACGGATGGACGGCGACTCCGATCCTAAGCTCGCTGCTTAGTA
GTCGGTGGTGGGGAGCTGCTCGTGGGTGCGGGAGATGAAGAGCAGCTCGTAGATGACGCCGGCGAGGCCGCCGCCGATGAGGGGGCCGACCCAGTACACC
CACTGGTACCCCCACTCCCAGCTGACGAGGGCGGGGCCGAAGGAGACGGCGGGGTTCATGGACGCGCCGGAGAAGGCGCCGAAGGTCACGGCCGGGTTCA
CGTGCCCGCCGGAGATGTTGGCGCCCACGGACACCGCC