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Detailed information on CNT30392788


BLAST search results

BLAST vs Swiss-Prot:
sp|O64964|TIP11_MAIZE, E-value = 4e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677458Triticum turgidumSetaria viridis14.2943.3694.62186forward
CNT30522256Triticum turgidumSetaria italica10.2928.6388.06134forward
CNT30524746Triticum turgidumPhaseolus vulgaris18.3626.4478.66239forward
CNT30628528Triticum turgidumVigna unguiculata13.9820.5281.32182forward
CNT30708602Triticum turgidumGlycine max11.5234.883.33150forward
CNT30296934Triticum turgidumTriticum aestivum24.7359.85100322forward
CNT30223457Triticum turgidumHordeum vulgare11.3749.6696.62148forward
CNT30586176Triticum turgidumMusa acuminata29.4262.7986.16383forward
CNT3084637Triticum turgidumVigna radiata18.3620.7680.75239forward
CNT30552975Triticum turgidumOryza glaberrima11.3725.5295.27148forward
CNT30242094Triticum turgidumAvena sativa14.9852.9994.36195forward
CNT30136463Triticum turgidumLolium perenne18.8933.5693.09246forward
CNT301194Triticum turgidumZea mays18.6648.795.88243forward
CNT30229564Triticum turgidumAnanas comosus14.2126.9382.7185forward
CNT30623609Triticum turgidumDaucus carota8.9920.8284.62117forward
CNT30361046Triticum turgidumSorghum bicolor10.2221.3590.23133forward
CNT3057351Triticum turgidumAmborella trichopoda18.227.8583.12237forward
CNT30322744Triticum turgidumAsparagus officinalis5.4521.0194.3771forward
CNT30575580Triticum turgidumOryza barthii7.7630.1594.06101forward
CNT30579294Triticum turgidumEchinochloa crusgalli17.5931.9496.07229forward

Expression of CNT30392788

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVAGSIETEATGSSPHGILHVTPRADWSFCANHST*

>peptide 2 (58 aa)
ASSAYMHHGMRRPREKLKRLMTGRKGETKHHTDGWTATPILSSLLSSRWWGAARGCGR*

>peptide 3 (77 aa)
MLPPTKAPKVTAGFTAKACAIAAEIRPAGVAAPSGLSLPARTIKQGKQSVRYALVQMWKWINFCYLWAEASTWWQAR*

>peptide 4 (86 aa)
MTPARPPPMRGPTQYTHWYPHSQLTRAGPKETAGFMDAPEKAPPTRMLAPTMKPMAMGAMVPVGSPPVEKRRRKQAAVEPRSWAIQ*

>peptide 5 (69 aa)
MERINRREERRRNSLKAMPEPWPAKTKMSVEMNSASAALRAPTSYTSRWLPTAILLTGIFAHLQASLAF*

>peptide 6 (45 aa)
GELRIHASWHAATARETKTTDDGKEGGDEASHGRMDGDSDPKLAA*

Sequence

>CNT30392788
AGGCGAGCTCCGCATACATGCATCATGGCATGCGGCGACCGCGCGAGAAACTAAAACGACTGATGACGGGAAGGAAGGGGGAGACGAAGCATCACACGGA
CGGATGGACGGCGACTCCGATCCTAAGCTCGCTGCTTAGTAGTCGGTGGTGGGGAGCTGCTCGTGGGTGCGGGAGATGAAGAGCAGCTCGTAGATGACGC
CGGCGAGGCCGCCGCCGATGAGGGGGCCGACCCAGTACACCCACTGGTACCCCCACTCCCAGCTGACGAGGGCGGGGCCGAAGGAGACGGCGGGGTTCAT
GGACGCGCCGGAGAAGGCGCCGCCGACCAGGATGTTGGCGCCCACGATGAAGCCGATGGCGATGGGCGCGATGGTGCCGGTGGGGAGCCCGCCGGTGGAG
AAGCGGAGGAGGAAGCAGGCGGCGGTGGAGCCCAGGAGCTGGGCGATCCAGTAGAGCAGGCCGCGGAAGAGGGTGATGTTGCCGCCCACGAAGGCGCCGA
AGGTCACGGCCGGGTTCACGGCGAAGGCGTGCGCTATCGCCGCCGAGATCAGGCCGGCGGGGGTCGCCGCGCCGTCGGGGCTCAGCTTGCCTGCACGCAC
AATCAAACAAGGAAAACAGTCAGTCAGATACGCACTGGTGCAAATGTGGAAATGGATCAATTTTTGCTACTTGTGGGCAGAAGCTAGCACATGGTGGCAG
GCTCGATAGAAACAGAAGCTACTGGTTCATCACCACATGGGATTCTCCACGTAACCCCAAGGGCAGACTGGTCATTCTGCGCCAATCATTCAACCTAAAA
AGCCTGTAGCAATCAAACCCTACTCCTTTCTGAGACAGATTTCTCTAGGCTACTGGTAACGCCTCATAAAGTGTTTCTTTCTTTCTTGTCACTTAACTTG
TCTCCAAAACCAAAAGCAGGCGGTTTTTCTCAATCCCTTTGTCGTACGTGCACTAGCTACCTATTATGATGATGCAAATTACCAATTAACAAAGTTAATT
TCTCCTAATTAAGCTACCGCATGCGAGCAAGCGAGTGGTGATGGAAAGAATTAATCGACGAGAAGAAAGAAGAAGAAACTCACTGAAGGCCATGCCGGAG
CCCTGGCCGGCGAAGACGAAGATGAGCGTGGAGATGAACTCGGCGAGCGCCGCCTTGAGGGCGCCGACCTCGTACACCTCACGGTGGCTCCCCACGGCGA
TCCTGCTGACCGGCATTTTCGCTCACCTCCAAGCCTCGCTAGCTTTCTAGAGAAGAAGAGACTGGCCGGAGTCGAGAGAGATGAGAGAGGTGAGTTGGTG
AG