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Detailed information on CNT30146734


BLAST search results

BLAST vs Swiss-Prot:
sp|P42067|TIP1_MEDSA, E-value = 2e-51

BLAST vs NONCODE:
NONGMAT001209, E-value = 2e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518137Medicago truncatulaJuglans regia28.828.2579.21178forward
CNT30698182Medicago truncatulaQuercus lobata30.4230.0383.51188forward
CNT30373597Medicago truncatulaArabidopsis thaliana35.1134.8982.03217forward
CNT30618329Medicago truncatulaSesamum indicum25.8912.9883.75160forward
CNT30727223Medicago truncatulaCorchorus capsularis27.6712.1983.04171forward
CNT30524746Medicago truncatulaPhaseolus vulgaris36.0824.6786.55223forward
CNT30503973Medicago truncatulaNicotiana attenuata23.4621.2383.45145forward
CNT30708635Medicago truncatulaGlycine max44.9848.8685.61278forward
CNT30635699Medicago truncatulaCapsicum annuum20.715.7883.59128forward
CNT3084637Medicago truncatulaVigna radiata44.8224.0782.31277forward
CNT30612524Medicago truncatulaArabis alpina18.4544.5382.46114forward
CNT30623609Medicago truncatulaDaucus carota28.4831.3282.39176forward
CNT30423736Medicago truncatulaPapaver somniferum29.4522.2583.52182forward
CNT3057351Medicago truncatulaAmborella trichopoda30.9122.4481.15191forward
CNT3051018Medicago truncatulaCucumis sativus11.3326.0288.5770forward

Expression of CNT30146734

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MSTGDVSTNGDSNKESECMGDGGRDETGRGVWVSCLLRCSYGDVSDRHVEIIAFVNKHSLFFFSYCESAFWFSLLLVFVSYLVCYL

>peptide 2 (78 aa)
MDAPVKAPPTKMLAPTMKPIAIGAIIPMLPFFGSTAVAPKVTAGLTCPPEMLAPTETATKRANAWAMEAEMRPAGVSG*

Sequence

>CNT30146734
AAAAGAAAGAAATCATCGAGGAATTCAATAATACAGAATTTCAAATTTCATTTCCCATCTAGTAGTCAGTAGTTGGGAGCTGCTCGTGGGTGCTGTTGAT
GAAGAGAACCTCATAGACAAGTCCAGCAATTCCACCACCGATAAGTGGGCCAGCCCAGTAGACCCAGTGGTTGGACCAGCTCCAGCTCACAACAGCAGGC
CCGAATGACACTGCTGGGTTCATGGATGCTCCGGTGAAGGCTCCACCAACCAAAATGTTAGCACCAACGATGAAACCAATAGCAATTGGTGCAATAATTC
CAATGTTACCCTTCTTTGGGTCAACGGCTGTAGCACCGAAGGTGACAGCGGGGTTGACATGTCCACCGGAGATGTTAGCACCAACGGAGACAGCAACAAA
GAGAGCGAATGCATGGGCGATGGAGGCAGAGATGAGACCGGCAGGGGTGTCTGGGTGAGTTGCCTCTTGAGGTGTTCCTACGGCGATGTTTCTGATAGGC
ATGTTGAAATAATCGCTTTTGTTAACAAACACTCACTCTTTTTTTTTAGTTACTGTGAAAGCGCTTTCTGGTTTTCGCTTCTGCTTGTTTTCGTTTCCTA
TCTTGTGTGTTACTTATA