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Detailed information on CNT30364799


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XA61|TIP21_ORYSJ, E-value = 1e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Sorghum bicolorSetaria viridis21.1625.5291.93161forward
CNT30521445Sorghum bicolorSetaria italica20.8917.4592.45159forward
CNT30628730Sorghum bicolorVigna unguiculata23.1339.4678.98176forward
CNT30223457Sorghum bicolorHordeum vulgare19.7150.3489.33150forward
CNT30397893Sorghum bicolorTriticum turgidum24.4429.291.4186forward
CNT30589165Sorghum bicolorMusa acuminata23.3938.8689.33178forward
CNT30552658Sorghum bicolorOryza glaberrima27.9931.6589.2213forward
CNT30443527Sorghum bicolorAegilops tauschii20.8929.0192.45159forward
CNT30256642Sorghum bicolorAvena sativa24.1835.7389.67184forward
CNT30229501Sorghum bicolorAnanas comosus16.1620.7186.99123forward
CNT3066802Sorghum bicolorLeersia perrieri20.8967.0988.68159forward
CNT30627409Sorghum bicolorDaucus carota22.3427.0782.35170forward
CNT30596416Sorghum bicolorOryza meridionalis16.6927.9794.49127forward
CNT30369235Sorghum bicolorOryza glumipatula22.3415.0787.06170forward
CNT30644098Sorghum bicolorCannabis sativa19.3252.584.35147forward
CNT3057351Sorghum bicolorAmborella trichopoda21.9419.6279.64167forward
CNT30101968Sorghum bicolorOryza rufipogon20.8920.9293.08159forward
CNT30576681Sorghum bicolorOryza barthii18.9224.7895.14144forward

Expression of CNT30364799

Peptides detected in this lncRNA

>peptide 1 (53 aa)
LTRNVNHICFFTSRTADRTRSLHRFYPEKKRELNTKDHMHGRDIIDTHYIQTI*

>peptide 2 (43 aa)
MDEISSTHITYKPFNVAKSKANDDADPNAAFNSNPNSPDGRST*

>peptide 3 (97 aa)
TNSKRKSHLFFHFKNRRSDEIFTSILPRKKKGTEYKGPYAWTRYHRHTLHTNHLTWRRAKQTTTQIQTLRSIQIQTAQTAGALRRSPGRRPAGSCRR*

>peptide 4 (91 aa)
MEPPLKGPAARMLAPTMKPMAMGAMVPREPFLGSAAVAYTVYTSAKVMMISNTTPSSSLIPDTPCVGMALPWVTNLRSRHATEAPSSCATQ*

Sequence

>CNT30364799
ACTAACTCGAAACGTAAATCACATTTGTTTTTTCACTTCAAGAACCGCAGATCGGACGAGATCTTTACATCGATTTTACCCCGAAAAAAAAAGGGAACTG
AATACAAAGGACCATATGCATGGACGAGATATCATCGACACACATTACATACAAACCATTTAACGTGGCGAAGAGCAAAGCAAACGACGACGCAGATCCA
AACGCTGCGTTCAATTCAAATCCAAACAGCCCAGACGGCCGGAGCACTTAGGCGTAGTCCTGGTCGGCGACCTGCTGGTAGTTGCCGCCGATGAAGACGT
CGCCGTAGATGAGGCCAGCGAGGAGCGTGCGGGGTTCATGGAGCCGCCGCTGAAGGGCCCCGCGGCGAGGATGTTGGCGCCGACGATGAAGCCGATGGCG
ATGGGCGCGATGGTGCCGAGGGAGCCCTTCTTGGGGTCGGCGGCGGTGGCGTACACGGTGTACACGAGCGCGAAGGTGATGATGATCTCGAACACCACGC
CCTCGAGCTCGCTGATCCCGGACACGCCGTGCGTCGGGATGGCCTTGCCGTGGGTCACGAACTTGAGGAGCAGGCACGCCACGGAGGCACCCAGCAGCTG
CGCCACCCAGTAGAAGATGCCCGTCAGGATGGTGATGTGGCGCTGAAGGAGTCGCCGACACTTCCGAACGCGAGCTTCACCATCTTGCTTTCGCTCTTAG
CTAGCTCTTCGTCACGGCAGGGAAGGCTTGGCGCTGTGAGCTTGAGAGATTGCTAGCTCTG