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Detailed information on CNT30233607


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708457Brassica oleraceaGlycine max54.7664.7179.58431forward
CNT3085597Brassica oleraceaVigna radiata43.3324.7180.94341forward
CNT30540204Brassica oleraceaBrassica napus6997.8499.45543forward
CNT30311401Brassica oleraceaCamelina sativa69.2569.0792.66545forward
CNT3059858Brassica oleraceaArabidopsis lyrata68.6194.2490.37540forward
CNT3073783Brassica oleraceaBrassica juncea86.0298.5499.41677forward
CNT30259451Brassica oleraceaBrassica rapa91.1198.3598.88717forward
CNT30611432Brassica oleraceaArabis alpina72.0560.0689.07567forward
CNT30210187Brassica oleraceaHelianthus annuus67.8565.2880.15534forward
CNT30350304Brassica oleraceaEragrostis tef40.0339.8778.41315forward
CNT30479074Brassica oleraceaArabidopsis halleri69.2594.4590.09545forward
CNT30621314Brassica oleraceaCajanus cajan40.2825.1481.7317forward

Expression of CNT30233607

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MASIASLPFLTSLSFNSFIDFSSFPNPRGIVYP*

>peptide 2 (31 aa)
MSLQVESHRFGTREEQCLQESDRPFLESQVQ*

>peptide 3 (40 aa)
MAIISYKRRICLHRVLQHKETDGTKRNKQDFRIQENGKPT*

>peptide 4 (33 aa)
MIISVELEAGQDIVVDGIRQMIKKVLVRPHTGH*

Sequence

>CNT30233607
TTACTTGTAAATAATTCCATAACATTCTTTTAAATATGTTAACTGAGTTTCTTGGTTATTTCTAAATACCAACCATTAATCCTAGAAGTTGTTCTTTATG
GCCATTATTTCTTACAAAAGACGAATATGTTTACACAGGGTGTTACAACACAAAGAAACTGATGGTACCAAGAGAAACAAACAAGATTTTAGGATACAAG
AGAATGGGAAACCAACATAAAACACCATGAGATGAATACGATATGATCATCTCAGTGGAACTTGAGGCTGGTCAAGACATTGTTGTTGACGGGATCCGCC
AAATGATCAAGAAGGTTCTGGTAAGGCCCCACACCGGTCACTAGTCCCTGCACAAAATAGCCTAGGATGGCGAGCATTGCCAGTCTACCGTTCTTGACCT
CCTTGAGTTTCAACTCCTTCATCGACTTCTCGTCTTTTCCAAACCCAAGAGGTATTGTTTACCCATAGATCCTGGGTTGTACCAGTCCTGCAACCTCCTG
TGCTCAGCAAAACCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGA
ACCAGGGAAGAGCAGTGTCTGCAGGAATCAGACCGGCCTTTCCTAGAATCTCAGGTGCAATAGCTCCAGCTGCACCCAACATAGCGAACCTCCCGTTGAT
GATCTCTCCGTAGGCCAGCCATCTCGGCTCGATGAAGCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGCGGATCGAATCCAAAGTC