Detailed information on CNT30350304


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C639|LHCA5_ARATH, E-value = 8e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30540204Eragrostis tefBrassica napus39.8756.7678.73315forward
CNT30233607Eragrostis tefBrassica oleracea39.8740.0378.41315forward
CNT30311401Eragrostis tefCamelina sativa39.8739.9279.68315forward
CNT3082235Eragrostis tefBrassica juncea39.8741.578.73315forward
CNT30259451Eragrostis tefBrassica rapa39.8743.2178.73315forward
CNT30479074Eragrostis tefArabidopsis halleri37.2250.9580.27294forward
CNT30557569Eragrostis tefPanicum hallii41.1431.3792325forward

Expression of CNT30350304

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MNRDAVPQTLHHHQPTRTNPHTSRRSIAPTGSS*

>peptide 2 (35 aa)
MQCLKRFTIINQRARIHTHLVAQLHRQAAASNATG*

>peptide 3 (63 aa)
MKYPRMASMASLPFLISLSLSSLSDFSSLPRKYCLPMEPGLYQSCSRRCSAKPMSAISKTKSV*

Sequence

>CNT30350304
AACTGCCTGGATAAACCCTGGCAAACTAAAGGTTATATGATACTGTACCTAGCTAGGTTTGATAACACGAAGTAATTGTTGGCAATGTTGAGGTAGTATC
ACGGTAGGAGGAATTGTACATTAATTTACCATGTGCAATACAATATCCGGTCTCAACAAGACGATCAATTGCTATTTTGTTACAAGCAGCAGGCTGGCGA
TGCATGAATCGTGATGCAGTGCCTCAAACGCTTCACCATCATCAACCAACGCGCACGAATCCACACACATCTCGTCGCTCAATTGCACCGACAGGCAGCA
GCTAGCAACGCAACGGGCTAGAAAGAAAGGCAGTAAAGCGCAATCTTTCTAGTGGAACTTGAGGCTGGTGAGGACGTTGTTGTTGACGGGGTCGGCGAGG
TGGTCGAGCAGGTTCTGGTAGGGTCCTTCGCCGGTGACAAGGCCCTGGATGAAGTACCCCAGGATGGCGAGCATGGCGAGCCTGCCGTTCTTGATCTCCT
TGAGCTTGAGCTCCTTGAGCGACTTCTCGTCCTTGCCGAGGAAGTACTGCTTGCCCATGGAGCCCGGGTTGTACCAGTCCTGCAGCCGGCGGTGCTCGGC
GAAGCCCATGAGCGCCATCTCGAAGACGAAGAGCGTGTAGGGGTCGGCCCAGTAGTTGTAGCTGCCGGCCAGAGAGGAGAGCCTGGGTCGCCATTACTTC
TGCTTTTTTTTTTCTCGACACTCTGAGGTCGCTGCTGCTCTGCAATTTGGGAGGAGGAGGTGTGCACAGAAGAAGAGGCGCGAAAAATAT