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Detailed information on CNT30281438


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Chenopodium quinoaArabidopsis thaliana19.7536.4879.46224forward
CNT30379782Chenopodium quinoaManihot esculenta13.6724.4985.16155forward
CNT30405505Chenopodium quinoaBeta vulgaris13.2340.6587.33150forward
CNT30526207Chenopodium quinoaPhaseolus vulgaris28.4828.0683.28323forward
CNT30631224Chenopodium quinoaVigna unguiculata28.4839.6383.28323forward
CNT30486017Chenopodium quinoaOlea europaea21.2524.3782.57241forward
CNT30711417Chenopodium quinoaGlycine max28.7518.2185.28326forward
CNT3045175Chenopodium quinoaPrunus dulcis17.944.3283.74203forward
CNT3085597Chenopodium quinoaVigna radiata28.7523.6282.52326forward
CNT30540202Chenopodium quinoaBrassica napus19.7543.6682.59224forward
CNT30233367Chenopodium quinoaBrassica oleracea16.1420.5483.06183forward
CNT30145875Chenopodium quinoaMedicago truncatula28.7519.7879.75326forward
CNT30313529Chenopodium quinoaCamelina sativa18.6156.5780.57211forward
CNT3060116Chenopodium quinoaArabidopsis lyrata13.1431.1781.88149forward
CNT3081731Chenopodium quinoaBrassica juncea19.7533.4383.04224forward
CNT30259602Chenopodium quinoaBrassica rapa16.1424.783.06183forward
CNT30611624Chenopodium quinoaArabis alpina19.7522.280.36224forward
CNT30597278Chenopodium quinoaFraxinus excelsior11.0224.885.6125forward
CNT30608086Chenopodium quinoaGossypium raimondii12.3535.8182.14140forward
CNT30217954Chenopodium quinoaKalanchoe fedtschenkoi10.7633.8983.61122forward
CNT30214152Chenopodium quinoaHelianthus annuus23.726182.16269forward
CNT30625265Chenopodium quinoaDaucus carota28.5736.2879.32324forward
CNT30350310Chenopodium quinoaEragrostis tef24.3440.1279.35276forward
CNT30479074Chenopodium quinoaArabidopsis halleri13.1425.8279.87149forward
CNT30359247Chenopodium quinoaLactuca sativa29.0139.0779.64329forward
CNT30573352Chenopodium quinoaVitis vinifera14.4625.1585.37164forward
CNT3055927Chenopodium quinoaAmborella trichopoda9.8825.8783.04112forward
CNT30118713Chenopodium quinoaCitrus clementina13.6725.7582.58155forward
CNT30583045Chenopodium quinoaEchinochloa crusgalli13.6720.0581.29155forward
CNT30725700Chenopodium quinoaLupinus angustifolius28.2235.7581.25320forward
CNT3040126Chenopodium quinoaMarchantia polymorpha18.2531.2278.74207forward

Expression of CNT30281438

Peptides detected in this lncRNA

>peptide 1 (51 aa)
VTQDSQHSQPSILHLLELKILQRFLVLAEAQWVEDRSAGVCWLTRPSKALL*

>peptide 2 (45 aa)
MGGLCLDANQRGLFAFCCQQIPKWKRSDQNGQLPIIILLSILCFF*

>peptide 3 (37 aa)
MLAHQTQQSPSLDPKSIACPWTLGCTSLAISCARQSP*

>peptide 4 (32 aa)
MDPGLYQSCNLLCSAKPISAISKTNNVNGSAQ*

>peptide 5 (29 aa)
MQTKGVCLHFAVNKFQSGKDQIKMVSYPS*

Sequence

>CNT30281438
AAGTAACCCAAGATAGCCAACATAGCCAACCTTCCATTCTTCACCTCCTTGAGCTTAAGATCCTTCAAAGATTTCTCGTCCTTGCCGAAGCCCAATGGGT
TGAAGATAGGTCCGCCGGGGTATGCTGGCTCACCAGACCCAGCAAAGCCCTTCTCTAGACCCAAAAAGTATTGCTTGCCCATGGACCCTGGGTTGTACCA
GTCTTGCAATCTCCTGTGCTCGGCAAAGCCCATAAGTGCCATCTCAAAGACAAACAATGTGAATGGGTCAGCCCAGTAGTCGTAGGTGCCTGCTGGTGGG
ATCACCCCGGTTTTGAACCATGGGAGGGCTCTGCTTGGATGCAAACCAAAGGGGTCTGTTTGCATTTTGCTGTCAACAAATTCCAAAGTGGAAAAGATCA
GATCAAAATGGTCAGCTACCCATCATAATATTATTATCAATTCTTTGTTTTTTTTAGGAAAAAAAGGGAAATATTATGAAGATAATTTGATGATTTGACT
TTTCATTTTATGGTGTTAAAATTATTCCTACATAATTTGAAGTTTGGATGTGTTTTCCAAGATGAACATGTTTCCAAGTAGTATGTGCTGCCTGAGAGTA
TTTTGTTTAATCATAATTTAATCTAGTGTGTATGTGTCTTTTTTTTTTCTTTTTTTTTAAAAAAAAAAATAAGAAAAATACTCATAAATCATTTACTCTT
AAAATAAATTATTAGCTTCGATTTTTATTAGTTGCACCTTTGGAATTTTTTATATATCTCACCAACAATACCCCAAAGTTGCAACTAAAAAAAATCGGAG
GTAGTATAAAGTTATTTATATAGGACAAACTCTTAGCATGTCCATTGTAAGTTAAATAGTATAATAAGTCCATTAAGATGATGAAATTATAACTTCCTAT
AAAGTTCTATCAAGAACAACCCTAGTTAAGCAAGTATAAGAATGATCAACTCATCATACACCAATTGCCCAAAAAGCTTTATACTTAAATTCTACTAGAA
GATGGCAAAAATGATCAATGCTATATCTGATATAAGCTAAATTCAAATTCTACCAATCGTTTATCATTCAACATACTTCTACGTACGTTTAAAATTTGAA
ACCGACAGTAATACCAAACAAGCCCTAATTTCTA