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Detailed information on CNT30583045


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281438Echinochloa crusgalliChenopodium quinoa20.0513.6781.29155forward
CNT30397679Echinochloa crusgalliTriticum turgidum18.3751.0888.73142forward
CNT30543417Echinochloa crusgalliBrassica napus21.9924.7581.18170forward
CNT30233367Echinochloa crusgalliBrassica oleracea21.9919.0881.18170forward
CNT30441655Echinochloa crusgalliAegilops tauschii51.6279.3286.22399forward
CNT30311401Echinochloa crusgalliCamelina sativa21.8621.4283.43169forward
CNT3059858Echinochloa crusgalliArabidopsis lyrata21.7329.3283.93168forward
CNT3073783Echinochloa crusgalliBrassica juncea21.9924.7581.18170forward
CNT30259451Echinochloa crusgalliBrassica rapa21.9923.3281.18170forward
CNT30210187Echinochloa crusgalliHelianthus annuus23.5422.2580.22182forward
CNT30479074Echinochloa crusgalliArabidopsis halleri21.7329.1284.52168forward
CNT30359331Echinochloa crusgalliLactuca sativa25.4922.8580.71197forward
CNT30573352Echinochloa crusgalliVitis vinifera40.6248.1678.03314forward
CNT3055927Echinochloa crusgalliAmborella trichopoda15.6527.9485.12121forward
CNT30557569Echinochloa crusgalliPanicum hallii66.6249.7191.07515forward
CNT3040132Echinochloa crusgalliMarchantia polymorpha14.4924.6283.93112forward

Expression of CNT30583045

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MASMASLPFLISLSLSSFISFSVLPNPSGLKSGPRKYCLPMDPGLYQSWRRRCSAKPMSAMLKTKSV*

>peptide 2 (45 aa)
MNTIMHDATRLKPTVHQPAASMHMIEQRHIIIMYVSLPLHSNIMQ*

Sequence

>CNT30583045
ATTAACAGGATCGATTACTAATTTGTTACAAGCAGCTAGCGTGCAGGCCGGCCAGCGATATATATGAATACAATCATGCATGATGCAACACGCCTCAAAC
CCACTGTCCATCAGCCAGCAGCCAGCATGCATATGATCGAACAACGACACATCATCATCATGTACGTCTCGCTCCCACTACACAGCAATATAATGCAATA
ATCCTCTAGTGGAACTTGAGGCTGGTGAGGACGTTGTTGTTGACTGGGTCTGCCAGGTGGTCTAGCAGGTTCTGGAACGGGCCGACGCCGGTGACGAGGC
CCTGGATGAAGTAGCCGAGGATGGCGAGCATGGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCCGTCTTGCCGAACCC
TAGCGGGTTGAAGAGCGGGCCGAGGAAGTACTGCTTGCCCATGGACCCCGGGTTGTACCAGTCCTGGAGGCGGCGGTGCTCGGCGAAGCCCATGAGCGCC
ATGTTGAAGACGAAGAGCGTGTAGGAGTCGGCCCAGTAGTCGTAGGTGCCCGCCGGCGGGATCACGCCCGTCTTGAACCACGGCAGCGCCGTCTCCGCCG
GGATGATGCCCAGCTTGCCGAAGATCTCGGGGGCGATGGCGCCGAACGCGCCGAGCATGGCGAACCGCCCGTTGATCACCTCGCCGTAGGCCAGCCACTT
GGGCTCGATGAAGCCGCCGGTGCCCTCGGGGTCGGACAGGCCAAGCGGGTCGAAACCGAAGTCGCCGGGAAGC