CANTATAdb - search

Detailed information on CNT3082235

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30311401	Brassica juncea	Camelina sativa	73.25	70.47	92.81	556	forward
CNT3059858	Brassica juncea	Arabidopsis lyrata	71.15	94.24	91.48	540	forward
CNT30210187	Brassica juncea	Helianthus annuus	70.36	65.28	80.52	534	forward
CNT30350304	Brassica juncea	Eragrostis tef	41.5	39.87	78.73	315	forward
CNT30479074	Brassica juncea	Arabidopsis halleri	72.46	95.32	90.73	550	forward

Expression of CNT3082235

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLQVESHRFGTREEQCLLESDRPFLESQVQ*

>peptide 2 (33 aa)
MASIASLPFLTSLSFNSFIDFSSFPNPRGIVYP*

>peptide 3 (39 aa)
MFTQGVTTQRSWWYQRERNKIVGYMRMGYQHKTPWDDMI*

>peptide 4 (34 aa)
MAIDIVISYKRRICLHRVLQHKEAGGTKEKETRL*

Sequence

>CNT3082235
CTCGGTTATTGCTAAATACCAACCATTAATCCTAGAAGCTGTTCTTTATGGCCATTGACATTGTCATTTCTTACAAAAGACGAATATGTTTACACAGGGT
GTTACAACACAAAGAAGCTGGTGGTACCAAAGAGAAAGAAACAAGATTGTAGGATACATGAGAATGGGATACCAACATAAAACACCATGGGATGATATGA
TATGATCATCTCAGTGGAACTTGAGGCTGGTCAAGACATTGTTGTTGACGGGATCCGCCAAATGATCAAGTAGGTTCTGGTAAGGTCCCACACCGGTCAC
TAGTCCCTGCACAAAATAGCCTAGGATGGCGAGCATCGCCAGTCTACCGTTCTTGACCTCCTTGAGTTTCAACTCCTTCATTGACTTCTCGTCTTTTCCA
AACCCAAGAGGTATTGTTTACCCATAGATCCTGGGTTGTACCAGTCCTGCAACCTCCTGTGCTCGGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAG
TGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAGGGAAGAGCAGTGTCTGCTGGAATCAGACCGGCCTTT
CCTAGAATCTCAGGTGCAATAGCTCCAGCTGCACCCAACATAGCAAACCGCCCGTTGATGATCTCTCCGTAGGCTAACCATCTCGGCTCGATGAACCCTC
CAGTACCCTCTGGGTCTGAAAGACCAAGCGGGTCGAATCCAAAGTCGCCAGGTAAGCTG