Detailed information on CNT30625265


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Daucus carotaArabidopsis thaliana39.8757.9883.15356forward
CNT30281438Daucus carotaChenopodium quinoa36.2828.5779.32324forward
CNT30711423Daucus carotaGlycine max39.4235.5980.68352forward
CNT3045167Daucus carotaPrunus dulcis15.0137.9685.07134forward
CNT30540898Daucus carotaBrassica napus34.8355.9483.28311forward
CNT30238557Daucus carotaBrassica oleracea36.5149.6282.21326forward
CNT30145920Daucus carotaMedicago truncatula69.3281.4581.1619forward
CNT30311401Daucus carotaCamelina sativa38.8643.9881.56347forward
CNT3077678Daucus carotaBrassica juncea39.8758.0882.58356forward
CNT30264551Daucus carotaBrassica rapa39.8746.1782.58356forward
CNT30611624Daucus carotaArabis alpina68.0960.2678.78608forward
CNT30210187Daucus carotaHelianthus annuus38.341.8180.99342forward
CNT30479074Daucus carotaArabidopsis halleri37.1857.5480.12332forward
CNT30573352Daucus carotaVitis vinifera38.9753.3779.89348forward
CNT30118713Daucus carotaCitrus clementina34.651.3380.58309forward
CNT30329767Daucus carotaDioscorea rotundata29.6843.380.38265forward
CNT30725047Daucus carotaLupinus angustifolius40.6545.4380.72363forward

Expression of CNT30625265

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MGLQGYAGSPDPARPFSKPKKYCFPIDPGLYQSCNLLCSANPMRAISRTKSV*

>peptide 2 (42 aa)
MTPVWNHGKAVSAGMSPSFPKISGAIAPAAPNMAKRPLIISP*

>peptide 3 (45 aa)
EVAAIIILGVVKMQLMFGCIINNSFSLTWLVCDDENPILRHNLLT*

>peptide 4 (30 aa)
MDFSSFPNPRGLKNGPPGVCWVSGSSQAFL*

>peptide 5 (37 aa)
MLGLRIQPGLSLSPRSIVFPLILDCTSLVISCALQIP*

>peptide 6 (34 aa)
MVQKVLKWSNACDQSLDEVTQYCQHSKSPILNLL*

Sequence

>CNT30625265
TGAAGTTGCTGCTATAATTATATTAGGTGTTGTGAAAATGCAGTTGATGTTTGGTTGCATTATAAACAACTCCTTTTCCCTTACATGGCTAGTTTGTGAT
GACGAAAACCCTATCTTAAGACATAACTTACTGACATAGATTATTTAAATATTCTCAAATTCAAACTAAATAGACTTGTGGAAAATATGCCCGCGGTAGT
TGGGCACACTTCCTAGTATGAGATAAAATTGACAAGGTGGTAAATTCACAATGTGGGTTTAAGTTCCAGAGTTCTAGTGGAACTTAAGGCTAGTCAAGAC
ATTGTTGTTAACAGGATCAGCCAAATGGTCCAGAAGGTTTTGAAGTGGTCCAACGCCTGTGACCAAAGCTTGGATGAAGTAACCCAATATTGCCAACATA
GCAAGTCTCCCATTCTTAACCTCCTTTAACTTGAGCTCTTTCATGGATTTCTCGTCTTTTCCGAATCCAAGAGGATTAAAAAATGGGCCTCCAGGGGTAT
GCTGGGTCTCCGGATCCAGCCAGGCCTTTCTCTAAGCCCAAGAAGTATTGTTTTCCCATTGATCCTGGATTGTACCAGTCTTGTAATCTCCTGTGCTCTG
CAAATCCCATGAGAGCCATTTCTAGGACAAAGAGTGTGTAGCCATCAGCCCAGTAGTTGTAAGTTCCTGCTGGAGGAATGACTCCTGTTTGGAACCATGG
CAAGGCTGTTTCAGCTGGAATGAGCCCAAGTTTTCCCAAAATCTCAGGGGCTATAGCTCCTGCTGCACCCAACATGGCAAAACGACCATTGATTATCTCT
CCGTAGGCTAGCCATTTGGGCTCGATGAATCCTCCGGTTCCTTCAGGGTCGGAAAGTCCCAAGGGGTCGAATCCAAAGTCACCTGGAAGGCTG