Detailed information on CNT30368340


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673615Sorghum bicolorSetaria viridis49.3447.4596.41223forward
CNT30303776Sorghum bicolorTriticum aestivum41.3744.8488.77187forward
CNT30442227Sorghum bicolorAegilops tauschii49.7846.8887.56225forward
CNT30311401Sorghum bicolorCamelina sativa34.0719.5282.47154forward
CNT3059858Sorghum bicolorArabidopsis lyrata34.0726.8883.77154forward
CNT30611432Sorghum bicolorArabis alpina39.618.9679.89179forward
CNT30474763Sorghum bicolorSaccharum spontaneum49.5625.6398.21224forward
CNT30140296Sorghum bicolorLolium perenne49.7823.288.44225forward
CNT30340473Sorghum bicolorEragrostis tef49.5627.4291.96224forward
CNT30479074Sorghum bicolorArabidopsis halleri34.0726.6983.77154forward
CNT30595666Sorghum bicolorOryza meridionalis50.2218.2287.67227forward
CNT30150205Sorghum bicolorBrachypodium distachyon25.8827.8686.32117forward
CNT30575448Sorghum bicolorOryza barthii21.0215.1590.5395forward
CNT30583035Sorghum bicolorEchinochloa crusgalli49.3421.1294.62223forward
CNT30497204Sorghum bicolorDigitaria exilis24.5620.7590.09111forward
CNT30115627Sorghum bicolorOryza nivara33.638.8888.82152forward
CNT30557458Sorghum bicolorPanicum hallii46.6842.297.16211forward
CNT3040132Sorghum bicolorMarchantia polymorpha24.7824.6283.93112forward

Expression of CNT30368340

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSPDATLQAPFHASAKPEHMNNRYDAATNGRSSGT*

>peptide 2 (36 aa)
MASMASLPFLISLSLSSFISFSVLPKPSGLKSGPPG*

>peptide 3 (85 aa)
MMQQPTDVLVELEAGEHVVVDGVGEVVEQVLERADAGDEPLDEVAEDGEHGEPAVLDLLELELIHLLLGLAEAERVEEWAAGIAQV

Sequence

>CNT30368340
TGCCCTTAAGATCAATTTTTCAGCGTCTAGGGAGGGAATTGTACATTGATTTACCATGTGCAATATAGTTTGTGGTCTCAACAAGATCAATACTAATTTG
TTACAAGCAGCAGCAGGCTGGCCATGAGTCCTGATGCAACGCTTCAGGCTCCTTTCCATGCATCAGCCAAGCCAGAGCATATGAACAACAGGTATGATGC
AGCAACCAACGGACGTTCTAGTGGAACTTGAGGCTGGTGAGCACGTTGTTGTTGACGGGGTCGGAGAGGTGGTCGAGCAGGTTCTGGAACGGGCCGACGC
CGGTGACGAGCCCCTGGATGAAGTAGCCGAGGATGGCGAGCATGGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCATTCATCTCCTTCTCGGT
CTTGCCGAAGCCGAGCGGGTTGAAGAGTGGGCCGCCGGGATAGCACAGGTCT