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Detailed information on CNT30607765


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 4e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30486017Gossypium raimondiiOlea europaea24.8116.7883.13166forward
CNT30711311Gossypium raimondiiGlycine max47.3831.9283.28317forward
CNT30543412Gossypium raimondiiBrassica napus19.1323.7584.38128forward
CNT30238548Gossypium raimondiiBrassica oleracea30.3424.0880.79203forward
CNT30173588Gossypium raimondiiTrifolium pratense30.3420.3284.73203forward
CNT30145652Gossypium raimondiiMedicago truncatula31.6911.1285.38212forward
CNT3059858Gossypium raimondiiArabidopsis lyrata28.132.8183.51188forward
CNT3081743Gossypium raimondiiBrassica juncea19.1323.5784.38128forward
CNT30264123Gossypium raimondiiBrassica rapa30.3422.2680.3203forward
CNT30597278Gossypium raimondiiFraxinus excelsior20.9327.7882.14140forward
CNT30217954Gossypium raimondiiKalanchoe fedtschenkoi16.4430.5684.55110forward
CNT30210187Gossypium raimondiiHelianthus annuus28.8523.5984.46193forward
CNT30479074Gossypium raimondiiArabidopsis halleri28.132.5882.45188forward
CNT30359331Gossypium raimondiiLactuca sativa31.0924.1385.58208forward
CNT30422640Gossypium raimondiiPapaver somniferum16.8927.6387.61113forward
CNT3055927Gossypium raimondiiAmborella trichopoda14.9523.0982100forward
CNT30118654Gossypium raimondiiCitrus clementina27.6534.3988.11185forward
CNT3037927Gossypium raimondiiCucumis melo27.238.0884.62182forward
CNT30725047Gossypium raimondiiLupinus angustifolius30.7925.7887.38206forward

Expression of CNT30607765

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MELLAGGIVPWNKYRHFHLMELEVSQDIVVERVSQVIQQVLVWSYTCHEPLYEVTQDCQHCQSPILHFFQLQILQ*

>peptide 2 (58 aa)
HCLCYRGDFRFTSKLNLKNWNTINHVMRYLQSYIGVYIYYIYHSATEMKKKLMILQWH*

Sequence

>CNT30607765
ACATTGCTTATGCTACAGAGGTGATTTTAGATTTACAAGTAAATTAAACTTAAAGAACTGGAACACAATTAATCATGTGATGAGATATTTACAGAGTTAT
ATAGGTGTATATATATATTATATATATCATTCAGCAACAGAGATGAAAAAGAAACTCATGATATTACAGTGGCATTAACAAAGTCTATTTCAGTTCTTTC
TCGCAGATTACAGAATAAATTTACACATGTCAAGAAAGGAGCAGAAAGGGATTTGGCAATGGAGCTTTTAGCCGGGGGGATAGTTCCATGGAACAAATAT
AGGCACTTTCATCTAATGGAACTTGAGGTTAGTCAAGACATTGTTGTTGAAAGGGTCAGCCAAGTGATCCAACAGGTTCTGGTATGGTCCTACACCTGTC
ACGAGCCCTTGTATGAAGTAACCCAAGATTGCCAACATTGCCAATCTCCCATTCTTCACTTCTTTCAGCTTCAAATCCTTCAATGACTTCTCATCTTTCC
CAAAACCAAGTGGGTTAAACAGTGGTACTTCTCGAACCCCAAGAAATATTGTTTCCCCATCGAACCTGGTTTGGCCCAGTCTTGGAACCTTCTGTGCTCT
GCAAATCCCATGAGTGCCATCTCGAACACAAACAAAGTGTAAGGGTCTGCCCAATAGCTGTATGTTCCT