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Detailed information on CNT30557458


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 2e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673615Panicum halliiSetaria viridis42.845.5396.73214forward
CNT30303776Panicum halliiTriticum aestivum37.444.8488.24187forward
CNT30543417Panicum halliiBrassica napus35.826.0681.56179forward
CNT30233367Panicum halliiBrassica oleracea35.820.0981.56179forward
CNT30442227Panicum halliiAegilops tauschii42.444.1787.74212forward
CNT3059858Panicum halliiArabidopsis lyrata33.629.3285.71168forward
CNT3082028Panicum halliiBrassica juncea33.821.9882.25169forward
CNT30259451Panicum halliiBrassica rapa35.824.5581.56179forward
CNT30611432Panicum halliiArabis alpina35.818.9681.56179forward
CNT30340473Panicum halliiEragrostis tef4225.793.33210forward
CNT30479074Panicum halliiArabidopsis halleri33.629.1284.52168forward
CNT30368340Panicum halliiSorghum bicolor42.246.6897.16211forward

Expression of CNT30557458

Peptides detected in this lncRNA

>peptide 1 (38 aa)
QTPLPSASQPAYEHTSIDHLSPPTTTTGGGTPVMHRTV*

>peptide 2 (39 aa)
MASMASLPFLISLSLSSFISFSVLPKPSGLKSGGARRSP*

>peptide 3 (33 aa)
LKPLFHQPASQHMNTHRSITSRLPLQQQAAAHP*

Sequence

>CNT30557458
CTCAAACCCCTCTTCCATCAGCCAGCCAGCCAGCATATGAACACACATCGATCGATCACCTCTCGCCTCCCACTACAACAACAGGCGGCGGCACACCCGT
GATGCACCGCACGGTCTAGTGGAACTTGAGGCTGGTGAGCACGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGAGCAGGTTCTGGTAGGGTCCGACACCG
GTGACGAGCCCCTGGATGAAGTAGCCGAGGATGGCGAGCATGGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCGGTCT
TGCCGAAGCCGAGCGGGTTGAAGAGCGGCGGTGCTCGGCGAAGCCCATGAGCGCCATGTTGAAGACGAAGAGCGTGTAGGAGTCGGCCCAGTAGTTGTAG
GTAGGAGAGGGACTGCTTGGACGCGAACCACAGCTGCCTGTCGGCGCCTTGCTGCAAGAGAAACAAGATTCAGTTCATTATCCATTCACGGATCAGTAGC