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Detailed information on CNT30673615


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30303776Setaria viridisTriticum aestivum39.5744.689.25186forward
CNT30543417Setaria viridisBrassica napus49.3633.7779.74232forward
CNT30233367Setaria viridisBrassica oleracea52.3427.6179.67246forward
CNT30442227Setaria viridisAegilops tauschii48.9447.9288.26230forward
CNT30311401Setaria viridisCamelina sativa35.9621.4283.43169forward
CNT3059858Setaria viridisArabidopsis lyrata35.7429.3284.52168forward
CNT3082002Setaria viridisBrassica juncea47.4530.5979.82223forward
CNT30259051Setaria viridisBrassica rapa49.3629.0479.74232forward
CNT30611432Setaria viridisArabis alpina38.0918.9681.01179forward
CNT30474763Setaria viridisSaccharum spontaneum57.6631.0196.68271forward
CNT30140296Setaria viridisLolium perenne58.0928.1489.01273forward
CNT30350309Setaria viridisEragrostis tef57.6646.5693.36271forward
CNT30479074Setaria viridisArabidopsis halleri35.7429.1284.52168forward
CNT30368340Setaria viridisSorghum bicolor47.4549.3496.41223forward
CNT30595666Setaria viridisOryza meridionalis58.321.9990.15274forward
CNT30583070Setaria viridisEchinochloa crusgalli57.8724.2695.96272forward
CNT30557458Setaria viridisPanicum hallii45.5342.896.73214forward
CNT3040132Setaria viridisMarchantia polymorpha23.8324.6283.93112forward

Expression of CNT30673615

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MDPLLVACVQLPTLWYLRFGRRGAQKKRRQKYVTV

>peptide 2 (41 aa)
MKYPRMASMASLPFLISLSLSSFISFSVFPNPSGLKSGPPG*

Sequence

>CNT30673615
ACAATGATTTACCATGTGTGATACAATTTCTGGTCTCAATTAACAGGATCGATTACTAATTTGTTATAAGCAGCAATGCTCTAGTGGAACTTGAGGCTGG
TGAGGACGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGAGCAGGTTCTGGAAGGGGCCGACGCCGGTGACGAGCCCCTGGATGAAGTACCCGAGGATGGC
GAGCATGGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCGGTCTTTCCGAACCCGAGCGGGTTGAAGAGCGGGCCGCCG
GGGTAGGACGGGTCGCCGGAGCCGGCGAGGAACTTCTCGAGGCCGAGGAAAGCCTGAGCCGCCATGGATCCCTTGCTTGTTGCTTGTGTTCAGCTGCCGA
CTCTCTGGTATCTGCGGTTCGGGAGGAGAGGGGCGCAGAAGAAGAGGCGCCAAAAATATGTGACGGTACC