Detailed information on CNT30540204


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 8e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708457Brassica napusGlycine max77.6664.7179.81431forward
CNT30233607Brassica napusBrassica oleracea97.846999.45543forward
CNT30311401Brassica napusCamelina sativa99.8270.2292.6554forward
CNT30611432Brassica napusArabis alpina102.8860.4989.14571forward
CNT30210187Brassica napusHelianthus annuus96.2265.2880.15534forward
CNT30350304Brassica napusEragrostis tef56.7639.8778.73315forward
CNT30479074Brassica napusArabidopsis halleri98.7494.9790.15548forward
CNT30368762Brassica napusSorghum bicolor20.922.9781.9116forward

Expression of CNT30540204

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLQVESHRFGTREEQCLQESDRPFLESQVQ*

>peptide 2 (33 aa)
MASIASLPFLTSLSFNSFIDFSSFPNPRGIVYP*

>peptide 3 (32 aa)
IISVELEAGQDIVVDGIRQMIKKVLVRPHTGH*

Sequence

>CNT30540204
GATCATCTCAGTGGAACTTGAGGCTGGTCAAGACATTGTTGTTGACGGGATCCGCCAAATGATCAAGAAGGTTCTGGTAAGGCCCCACACCGGTCACTAG
TCCCTGCACAAAATAGCCTAGGATGGCGAGCATTGCCAGTCTACCGTTCTTGACCTCCTTGAGTTTCAACTCCTTCATCGACTTCTCGTCTTTTCCAAAC
CCAAGAGGTATTGTTTACCCATAGATCCTGGGTTGTACCAGTCCTGCAACCTCCTGTGCTCGGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGT
GTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAGGGAAGAGCAGTGTCTGCAGGAATCAGACCGGCCTTTCCT
AGAATCTCAGGTGCAATAGCTCCAGCTGCACCCAACATAGCGAACCTCCCGTTGATGATCTCTCCGTAGGCTAGCCATCTCGGCTCGATGAAGCCTCCAG
TACCCTCTGGGTCTGAAAGACCAAGCGGATCGAATCCAAAGTCGCCAGGTAAGCT