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Detailed information on CNT30631052


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 7e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30173586Vigna unguiculataTrifolium pratense20.8917.1584.76164forward
CNT30311401Vigna unguiculataCamelina sativa30.5730.4282.5240forward
CNT3059858Vigna unguiculataArabidopsis lyrata29.5540.4981.9232forward
CNT30259035Vigna unguiculataBrassica rapa27.947.381.74219forward
CNT30214152Vigna unguiculataHelianthus annuus12.8722.982.18101forward
CNT30479074Vigna unguiculataArabidopsis halleri30.5741.5982.5240forward
CNT3027741Vigna unguiculataTheobroma cacao31.0855.8481.97244forward
CNT30725175Vigna unguiculataLupinus angustifolius30.3231.6185.71238forward

Expression of CNT30631052

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MAPTAPNIAKRPLMISPYASHFGSMNPPVPSGSESPRGSNP*

>peptide 2 (39 aa)
MSFLRSGTPRNKMSMMKIMMMMIQYQRAKRGYRKVIEFW*

>peptide 3 (31 aa)
MAVLSPQGSDQPCPEFQVLWHQLRPTLQNDH*

Sequence

>CNT30631052
TGTTTGTAATTGTTTTACATGTCATTTCTTAGAAGTGGCACACCAAGGAACAAAATGTCCATGATGAAGATCATGATGATGATGATACAGTACCAAAGAG
CAAAGAGAGGATATAGAAAAGTGATTGAGTTTTGGTAACTGCGTACAACAACAACACCAACAACCGAGACAGTAAAGAATATGTAACAACATATGATACA
TCAGTGGAACTTGAGACTGGTCAAGATGTTGTTGTGCACAGGGTCAGCAAGATGATCTAGGAGCTTGAATAAAGTAACCCAAGATCGCCAACATAGCCAA
CCTTCCATTCTTCACCTCCTTCAGCTTCAAATCCTTCAACGATTTCTCATCCTTGCCGAAACCAAGAGGTGCCATCTCCAACACGAACAGCGTGTACGAG
TCTGCCCAGTAGTTGTATGTTCCTGCGGGTGGGAACACACCGGTTCTGAACCATGGCAGTGCTGTCTCCTCAGGGATCAGACCAGCCTTGCCCAGAATTT
CAGGTGCTATGGCACCAACTGCGCCCAACATTGCAAAACGACCATTGATGATCTCACCATACGCTAGCCATTTCGGCTCGATGAACCCCCCTGTTCCTTC
AGGGTCTGAAAGCCCAAGAGGGTCAAATCCATAGTCACCGGGAAGGCTGCAAAAAACCAAATCTTCTTCTAAATTCCACAACTTTATCAGTAGTTCGTTC
AAAAATAGGATTTTTTTTTTTTTTTTTACCTGCCATCCAAGTAAGAAAGACTTTGCTTTGATGCAAACCATAAAGGTCTGTCCGC