« Back to Trifolium pratense search


Detailed information on CNT30173586


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Trifolium pratenseArabidopsis thaliana23.6436.8182.74226forward
CNT30379782Trifolium pratenseManihot esculenta17.0525.7581.6163forward
CNT30631052Trifolium pratenseVigna unguiculata17.1520.8984.76164forward
CNT3085597Trifolium pratenseVigna radiata25.4217.6183.95243forward
CNT30544167Trifolium pratenseBrassica napus21.3439.5381.37204forward
CNT30238557Trifolium pratenseBrassica oleracea21.0330.5981.09201forward
CNT30311401Trifolium pratenseCamelina sativa24.1629.2881.39231forward
CNT3059858Trifolium pratenseArabidopsis lyrata22.838.0582.57218forward
CNT3077678Trifolium pratenseBrassica juncea23.8537.1980.26228forward
CNT30264429Trifolium pratenseBrassica rapa23.8531.5880.26228forward
CNT30611481Trifolium pratenseArabis alpina24.1628.3479.65231forward
CNT30479074Trifolium pratenseArabidopsis halleri23.6439.1783.19226forward
CNT30621314Trifolium pratenseCajanus cajan25.4219.2786.01243forward
CNT3027741Trifolium pratenseTheobroma cacao2554.6979.08239forward
CNT30118713Trifolium pratenseCitrus clementina21.0333.3982.09201forward
CNT30329871Trifolium pratenseDioscorea rotundata11.5129.7384.55110forward
CNT30725175Trifolium pratenseLupinus angustifolius24.6931.3482.2236forward

Expression of CNT30173586

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MKSILILNTLCYQTKLHIHYRLKEFLHYQLIITVKSLETFDFYDNHF*

Sequence

>CNT30173586
GTTGACACGATGCAATTTAATTCCAAAACACAAGAGAGTGAACTAAAAGATGGTTGAGTTTTTTGATAATAATATATAATAGCTTACAACAACCAAAAAA
GAGCAAAGAAAAGAATATATAATATAATACATTGATGATTTAGTGGAACTTGAGACTGGTCAAGATGTTGTTGTTGACAGGATCAGCCAAATGATCTAAA
AGGTTTTGATATGGTCCAACACCTCTAACCTTCCATTCTTAACTTCTTTCAGCTTTAACTCTTTCAATGATTTCTCATCTTTACCAAAACCAAGAGGGTT
AAAGAAAGGTCCACCAGGTAGTTGTATGTTCCTGCTGGTGGAATAACACCGGTTTGGAACCAAGCGAGAGCGGTTTCTTGTGGAATTAAACCGGCTTTGC
CGAGGATTTCAGGTGCTATTGCTCCTACTGCTCCCAACATTGCGTAGCGACCATTGATTATCTCGCCGTATGCTAGCCATCTTGGCTCAATAAAACCTCC
TGTTCCTTCTGGATCTGAAAGTCCTAGAGGATCAAATCCATAGTCACCTGGAAGGCTGCAGGTGATGATGATGATAATGTCAAATGAAGTCAATTTTGAT
TCTCAACACATTGTGTTACCAAACAAAGTTGCATATACATTACCGGCTTAAAGAGTTTTTACACTATCAATTAATCATAACTGTCAAATCATTAGAAACG
TTCGACTTTTATGATAACCACTTCTAAAATCATACACATGGACTCTATTTGGGTAAATAACTTAATTAAAAGCTTATAGTATAAACGCTTATCATATAAG
TGTTTATGTGTAAGCTATTTCTATAACAAATGGTAAAATAAAACAATTTTCATACAAGTTATAAGTTGTATTCATAAACTACCTTAGAAAACTTATGAAA
TAAACTAAGAACATCTTATAGACATGTCATAAGTTGTTTTCATACGTTCTCTCAAA