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Detailed information on CNT30433772


BLAST search results

BLAST vs Swiss-Prot:
sp|P17784|ALFC1_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONPOPT000956, E-value = 6e-76

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Papaver somniferumOryza sativa28.6244.7578.3401forward
CNT30670509Papaver somniferumSetaria viridis9.9941.1882.86140forward
CNT30513666Papaver somniferumJuglans regia34.6294.3679.59485forward
CNT30374131Papaver somniferumArabidopsis thaliana10.1428.2986.62142forward
CNT30615958Papaver somniferumSesamum indicum17.9950.782.94252forward
CNT30282161Papaver somniferumChenopodium quinoa21.5654.0382.12302forward
CNT30729011Papaver somniferumCorchorus capsularis15.5632.4979.82218forward
CNT30158302Papaver somniferumPistacia vera15.9951.4983.93224forward
CNT30636619Papaver somniferumCapsicum annuum23.0541.4681.73323forward
CNT30222288Papaver somniferumHordeum vulgare15.5651.5481.19218forward
CNT30564032Papaver somniferumActinidia chinensis15.4258.781.02216forward
CNT3085829Papaver somniferumVigna radiata14.0652.8282.23197forward
CNT30552359Papaver somniferumOryza glaberrima20.7731.2979.04291forward
CNT30145818Papaver somniferumMedicago truncatula16.6322.9679.4233forward
CNT30437501Papaver somniferumAegilops tauschii10.4239.7885.62146forward
CNT30612844Papaver somniferumArabis alpina20.2742.8480.63284forward
CNT30458863Papaver somniferumSaccharum spontaneum65.0265.2178.81911forward
CNT30135152Papaver somniferumLolium perenne22.247.9981.03311forward
CNT3014640Papaver somniferumZea mays15.2760.6281.78214forward
CNT3066783Papaver somniferumLeersia perrieri14.2861.3580200forward
CNT30650515Papaver somniferumRosa chinensis36.8365.6581.59516forward
CNT30717283Papaver somniferumMalus domestica golden22.6347.3181.39317forward
CNT30625244Papaver somniferumDaucus carota21.9846.8182.14308forward
CNT30683148Papaver somniferumTriticum urartu10.4227.0985.62146forward
CNT30720854Papaver somniferumTriticum spelta12.5625.9282.39176forward
CNT30349462Papaver somniferumEragrostis tef23.5547.6980330forward
CNT30479170Papaver somniferumArabidopsis halleri10.0633.3385.82141forward
CNT30363770Papaver somniferumSorghum bicolor9.9226.6386.33139forward
CNT30622084Papaver somniferumCajanus cajan21.3440.2479.93299forward
CNT30355098Papaver somniferumLactuca sativa10.6440.2788.59149forward
CNT30154837Papaver somniferumPrunus persica36.7655.8679.61515forward
CNT30643281Papaver somniferumCannabis sativa20.9975.9782.99294forward
CNT3026858Papaver somniferumPopulus trichocarpa10.6423.0788.59149forward
CNT30120586Papaver somniferumCitrus clementina14.9262.5780.86209forward
CNT3036222Papaver somniferumCucumis melo10.6440.7181.88149forward
CNT30149431Papaver somniferumBrachypodium distachyon12.2835.6882.56172forward
CNT3099714Papaver somniferumOryza rufipogon14.2822.5581200forward
CNT30580631Papaver somniferumEchinochloa crusgalli14.762.6182.04206forward
CNT30724801Papaver somniferumLupinus angustifolius21.6324.279.54303forward

Expression of CNT30433772

Peptides detected in this lncRNA

>peptide 1 (38 aa)
TRQLLLQRKQTTSRKQKKVKTASNGKTLKSPVNICSKS*

>peptide 2 (60 aa)
MSCVPSTKISGSTIGTKPFSWQMMAYLAKPLAFSLMANCDGSLGPIFRTARHLANLAPAA*

>peptide 3 (48 aa)
YSTTIASKKTNNKQETKKSEDCLKWENFKKPRKYLLKELKKFNMNKKS*

Sequence

>CNT30433772
TACTCGACAACTATTGCTTCAAAGAAAACAAACAACAAGCAGGAAACAAAAAAAAGTGAAGACTGCCTCAAATGGGAAAACTTTAAAAAGCCCCGTAAAT
ATTTGCTCAAAGAGCTAAAGAAATTTAACATGAACAAGAAATCATAAATTTGAAAGATAAAGTTCAAAGGGAGACGTTTCTCAAACTCAGCATTGTGTGT
CATGAAACTCCCGTAAATTATTTGCAACAGCATCCGTTTCTTCATCACTCACTCTAAATAAAAACCACTAAACTCTAAAAATCCAAAGAGAAGAGATACT
TCATCCTGATTCCCCACTATACCATGTTCTTTTAACACATCAAAATAGCAAACTAAAATCAGAATAAAAGGACAAGATTATCAGAGAGAAACCACAACCT
CATCTAGTTGATTGATTAGTAGGTACCCAAAGTAGCTTCAGAGTTAGCCTTGCACCTTGCGAGGAAAGCTGCTTGTGCCTTCTCAATGTTCTCGTCCTTT
CCTGACCACGCCTTGAGGGTACTTTGTTGAAGAGCACGACCGAAGGAGAAAGATAGTGACCATGGCTTCTTGGCCTTGAGCTGGTTCATTGCGTTAAGGT
TTCTGGTTGCTTCCTCCTCACTTTGTCCACCTGACAAGAAAACAACAGCTGGAACAGCTGGGGGCATGGTCCTCTGAAGAGCACGGACGGTGTACTCAGC
AATCACTTCTGGAGCAACCTTCTTGGCTTCAGAACCTGGGGTAACCATGTTGGGCTTCAATAGAGTTCCCTCAAGAAGAACCTTGTGGTCGTTCAAAGCC
TTGTAGCAAGCTGCAAGAACTCTCTCGGTAACATCAGCACATCGGTCAATGTCGTGTGTTCCATCAACCAAGATTTCAGGCTCAACAATTGGCACCAAAC
CATTCTCTTGGCAGATGATGGCATATCTGGCCAAACCGTTAGCATTCTCGTTGATGGCCAATTGTGATGGCTCGTTGGGGCCAATCTTTAGAACTGCACG
CCACTTAGCAAATCTAGCACCAGCTGCGTAGTATGTAGCACATCTCTGGGCAAGGCCATCAAGACCCTGAGTGGTGGTCTCACCGTTGGTTCCGGCAAGT
TCAACGGTACCCTTGTCAACCTTGATACCTGGAAGGACACCACCTTCCTTCATGACATCAACGAACATCTTACCAGCAGCAGTCTTTTGGTATAGAGTCT
CTTCGAAAAGGATAACACCACTTAGGTATTGAAGACATCCAGGGGTGCAGAAAAGAAGCTCACGAAGAGCACGTCTGTTGGACTCAACGTTCTCAACATT
GATGCTTGATAGACGCTTTCCAATGGTACCGGTAGATTCATCAGCAGCAAGGATACCCTTTCCAGGGGTACCAATGTAGGCAGCATTGGCAATCAATTCA
T