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Detailed information on CNT30437501


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5N725|ALFC3_ORYSJ, E-value = 1e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515901Aegilops tauschiiJuglans regia35.1520.0680.62129forward
CNT30158302Aegilops tauschiiPistacia vera34.8829.4386.72128forward
CNT30564031Aegilops tauschiiActinidia chinensis25.0713.6188.0492forward
CNT30145818Aegilops tauschiiMedicago truncatula42.7815.4779.62157forward
CNT304578Aegilops tauschiiZea mays54.536.2383.5200forward
CNT30349462Aegilops tauschiiEragrostis tef50.4126.7387.57185forward
CNT30479170Aegilops tauschiiArabidopsis halleri41.4235.9382.24152forward
CNT30355098Aegilops tauschiiLactuca sativa26.726.4984.6998forward
CNT30433772Aegilops tauschiiPapaver somniferum39.7810.4285.62146forward
CNT3026858Aegilops tauschiiPopulus trichocarpa37.3321.2185.4137forward
CNT30557505Aegilops tauschiiPanicum hallii31.0613.0781.58114forward
CNT30113854Aegilops tauschiiFicus carica37.619.4685.51138forward

Expression of CNT30437501

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MVPLSTLMPGRTLPALRMSTKGLPPLVLWYRVLEGTRGAEEELTEGTTVVLNVLNIDAGEALADGAGGLVSSKDTLARGANVGSVLD

>peptide 2 (90 aa)
PLGEAGTSLVVLGTALAKVIKALGGGLTVGSSKLDGALVHLDAGEDIARLEDVDEGLATLGALVQGTGGHQGCRRGAHGGHDGCPQRSQH*

>peptide 3 (41 aa)
ATWRSGHQPRSTWHSACQGHQSPGWWSHRWFQQARWCPCPP*

Sequence

>CNT30437501
CGCCACTTGGCGAAGCGGGCACCAGCCTCGTAGTACTTGGCACAGCGCTTGCCAAGGTCATCAAAGCCCTGGGTGGTGGTCTCACCGTTGGTTCCAGCAA
GCTCGATGGTGCCCTTGTCCACCTTGATGCCGGGGAGGACATTGCCCGCCTTGAGGATGTCGACGAAGGGCTTGCCACCCTTGGTGCTCTGGTACAGGGT
ACTGGAGGGCACCAGGGGTGCAGAAGAGGAGCTCACGGAGGGCACGACGGTTGTCCTCAACGTTCTCAACATTGATGCTGGCGAAGCGCTTGCCGATGGT
GCCGGTGGACTCGTCAGCAGCAAGGATACCCTTGCCAGGGGTGCCAATGTAGGCAGCGTTCTTGATG