Detailed information on CNT3014640


BLAST search results

BLAST vs Swiss-Prot:
sp|P08440|ALF_MAIZE, E-value = 4e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552359Zea maysOryza glaberrima77.0529.2590.81272forward
CNT3074945Zea maysBrassica juncea23.518.9487.9583forward
CNT30650515Zea maysRosa chinensis51.5623.1685.16182forward
CNT30363770Zea maysSorghum bicolor46.4631.4294.51164forward
CNT30433772Zea maysPapaver somniferum60.6215.2781.78214forward
CNT30643281Zea maysCannabis sativa49.8645.4880.68176forward
CNT30149431Zea maysBrachypodium distachyon45.3333.294.38160forward

Expression of CNT3014640

Peptides detected in this lncRNA

>peptide 1 (59 aa)
GSITLVAGSKDCLSDVSAAINVMRAINKDLRLNNWHQTVLLADDGVASQTLSIQVNGKL*

Sequence

>CNT3014640
CGGCAGCATCACCCTTGTAGCAGGCAGCAAGGACTGTCTCAGTGACGTAAGCGCAGCGATCAATGTCATGAGGGCCATCAACAAGGATCTCAGGCTCAAC
AATTGGCACCAGACCGTTCTCCTGGCAGATGATGGCGTAGCGAGCCAGACCCTGAGCATTCAGGTCAATGGCAAGCTGTGACGGCTCGTTGGGGCCAATC
TTGAGAACAGCACGCCACTTGGCAAAGCGGGCACCGGCCTCGTAGTACTTAGCGCAGCGCTTGCCGAGGTCATCGTGGCCCTGGGTGGTGGTCTCCTTGT
CGGTGCCAACAACCTCAATGGTGCCCTTGTCGACCTTGATGCCAGGGAGGACG