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Detailed information on CNT30612844


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LF98|ALFC8_ARATH, E-value = 5e-146

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671170Arabis alpinaSetaria viridis22.3251.2180.41148forward
CNT30522989Arabis alpinaSetaria italica26.8519.1680.9178forward
CNT30641234Arabis alpinaNymphaea colorata30.3233.7281.59201forward
CNT30374131Arabis alpinaArabidopsis thaliana36.548.2183.47242forward
CNT30282161Arabis alpinaChenopodium quinoa30.6236.3179.8203forward
CNT30158302Arabis alpinaPistacia vera25.7939.3181.87171forward
CNT30222288Arabis alpinaHordeum vulgare21.5733.8181.12143forward
CNT3085829Arabis alpinaVigna radiata25.6445.5881.76170forward
CNT30145818Arabis alpinaMedicago truncatula34.5422.5680.79229forward
CNT3074945Arabis alpinaBrassica juncea31.2222.3184.06207forward
CNT30458863Arabis alpinaSaccharum spontaneum22.0210.4581.51146forward
CNT30135152Arabis alpinaLolium perenne23.2323.7780.52154forward
CNT304578Arabis alpinaZea mays26.0931.3479.19173forward
CNT30609050Arabis alpinaGossypium raimondii27.937.381.62185forward
CNT30649836Arabis alpinaRosa chinensis31.9818.8981.13212forward
CNT30479170Arabis alpinaArabidopsis halleri37.7159.191.2250forward
CNT30355098Arabis alpinaLactuca sativa12.0721.6287.580forward
CNT30154837Arabis alpinaPrunus persica42.8430.879.58284forward
CNT30433772Arabis alpinaPapaver somniferum42.8420.2780.63284forward
CNT30643281Arabis alpinaCannabis sativa18.8532.386.4125forward
CNT3026858Arabis alpinaPopulus trichocarpa31.0731.8984.47206forward
CNT30724801Arabis alpinaLupinus angustifolius46.4624.680.19308forward

Expression of CNT30612844

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MSSMCSVATHVRKRKTMTMASWSSIGSLRSSSWLLLPRSVLPTRTR*

Sequence

>CNT30612844
GCGCCATCACCAAGCTTAGCATCACCTTTGTATGTTCCAAGGGTGGCTTCTGAGTTAGCCTTGCACCTCACATACAAAGCCTCTTGAGCGGCCTTGACAT
TCTCCGCTTTGCCAGACCATGTCTTCAATGTGCTCTGTTGCAACGCACGTCCGAAAGAGAAAGACAATGACCATGGCTTCTTGGTCTTCAATTGGTTCAT
TGCGTTCAAGTTCCTGGTTGCTTCTTCCTCGCTCTGTCCTCCCGACAAGAACACGATAGCTGGAACAGCTGCTGGGACAGTCCTCTGGAGGGCACGGACG
GTGTGCTCAGCGATGACTTCAGTCACAGCAGCACATTTTTCGATGGAGTGAGATCCGTCAACAAGGATCTCTGGTTCAACAATGGGTACAAGACCGTTCT
CTTGGCAGATAACAGCGTATCTGGCTAATCCGTAAGCGTTCTCGTGGATGGAATGCTCTGATGGCTCGTTAGCTCCGATCTTGAGGACTGCACGCCACTT
GGCAAAACGAGCACCAGCTTCGTAGTACTTCTTGCAACGTTCACCAAGACCGTCAAGACCTTGAGTGGTAGTCTCACCGTCGGTTCCAGCTAGCTCAACG
GTACCCTTGTCAACTTTGATACCTGGAAGAACACCTCCTTCCTTCAAGATATCAACGAAGAGC