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Detailed information on CNT30552359


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5N725|ALFC3_ORYSJ, E-value = 2e-106

BLAST vs NONCODE:
NONORUT000701, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30222288Oryza glaberrimaHordeum vulgare16.6736.6490.97155forward
CNT3085829Oryza glaberrimaVigna radiata10.2225.4784.2195forward
CNT30458863Oryza glaberrimaSaccharum spontaneum44.9529.9289.95418forward
CNT3014640Oryza glaberrimaZea mays29.2577.0590.81272forward
CNT30717283Oryza glaberrimaMalus domestica golden34.7348.2179.57323forward
CNT30433772Oryza glaberrimaPapaver somniferum31.2920.7779.04291forward
CNT30149431Oryza glaberrimaBrachypodium distachyon20.9740.4689.74195forward

Expression of CNT30552359

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MVFVEGLVAGSEDLLGDIGTALNVMRAIDKDLRLDNRHQPVLLADDGIASKTLSIQVNGKLRWLVGANLEDGTPLGEASTGLVVLGATLAKVIVAL

Sequence

>CNT30552359
AAAAACACCGCGGGAACCGAGACACAGCAAAACGCCATATAGGTAAAAGGTTTAATTAACATAGGAGTACAGCAGAAAATAACAATAAAAAGATAGCATG
GAATTAAAGCCGCTGCTCCAATTTACCATACGCAGCATTTGATTACAGGAATACCAAAAAACTACTACCGATGACAGGTATTAATTATTAAAAAGCACAG
GTTCAGATTATTGCGACAAAAGTTTTTGATACCCGTAAGATTGGACGCTTGATAGCCAAACCACACTCAGAACCCTAAATATGCATACGGAGGATGTCCA
ATCGGATCTTCAGCCACCACCAGAGGCAGATCAGTACTTGTAGTCCTTGACGTGAAGGCTCTCAGAGGCACCCTCGCCGAGCACAGCATCACCCTGGTAT
GTACCAAGGGTAGCCTCAGAGTTGGCCTTGCACCTGGTGATGAAGGCCTTCTGCGCCTTCACCACGTTCTCCGTCTTGCCGCCCCAGGCCTTGAGCGTGC
TCTGCTGAAGAGCACGGCAGCAGGGACAGTCCTCTGGAGGGCGCGGACGGTGTACTCGGCGATGAGCTGAGGGGAAACCTTCTTGGATTCAGATCCTGGG
GTGACCATGTTGGGCTTCAGGAGGGAACCCTCCAGGAGGACATGGTGTTCGTTGAGGGCCTTGTAGCAGGCAGCGAGGACCTTCTCGGTGACATAGGCAC
AGCGCTCAATGTCATGAGAGCCATCGACAAGGATCTCAGGCTCGACAATCGGCACCAGCCCGTTCTCCTGGCAGATGATGGCATAGCGAGCAAGACCCTG
AGCATTCAGGTCAATGGAAAGCTGCGATGGCTCGTTGGGGCCAATCTTGAGGACGGCACGCCACTTGGCGAAGCGAGCACCGGCCTCGTAGTACTTGGCG
CAACGCTTGCCAAGGTCATCGTGGCCCTGG