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Detailed information on CNT30145818


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374131Medicago truncatulaArabidopsis thaliana11.7223.7187.39119forward
CNT30158302Medicago truncatulaPistacia vera11.3326.4482.61115forward
CNT3085829Medicago truncatulaVigna radiata18.5250.486.17188forward
CNT30437501Medicago truncatulaAegilops tauschii15.4742.7879.62157forward
CNT30612844Medicago truncatulaArabis alpina22.5634.5480.79229forward
CNT30456083Medicago truncatulaSaccharum spontaneum10.7430.4583.49109forward
CNT30650515Medicago truncatulaRosa chinensis19.825.5782.59201forward
CNT30717283Medicago truncatulaMalus domestica golden20.7931.4981.04211forward
CNT30683148Medicago truncatulaTriticum urartu15.4729.1379.62157forward
CNT30479170Medicago truncatulaArabidopsis halleri15.4737.1287.9157forward
CNT30355098Medicago truncatulaLactuca sativa13.537.0386.86137forward
CNT30154837Medicago truncatulaPrunus persica22.3624.6281.94227forward
CNT30433772Medicago truncatulaPapaver somniferum22.9616.6379.4233forward
CNT30643281Medicago truncatulaCannabis sativa22.9660.2180.26233forward
CNT3026922Medicago truncatulaPopulus trichocarpa17.6431.0884.36179forward
CNT30580631Medicago truncatulaEchinochloa crusgalli9.9530.784.16101forward

Expression of CNT30145818

Peptides detected in this lncRNA

>peptide 1 (84 aa)
RLNNWYKSILLAYDCISGQTIGILVDRVLRWLIGADFKHCTPFSETCTSFIVLSTTSTKSIKTLSGGFSISSGKLNGTEGHQGR*

Sequence

>CNT30145818
AGGCTCAACAATTGGTACAAGTCCATTCTCTTGGCATATGACTGCATATCGGGCCAAACCATAGGCATTCTCGTGGATAGAGTGCTCAGATGGCTCATTG
GGGCCGATTTTAAGCACTGCACGCCATTTAGCGAAACGTGCACCAGCTTCATAGTACTTAGCACAACGAGCACCAAGTCCATCAAGACCCTGAGTGGTGG
TTTCTCCATCAGTTCCGGCAAGCTCAACGGTACTGAAGGACACCAGGGGCGGTGAAAAGGAGTTCACGGAGAGCACGTCTGTTGGATTCAACATTCTCAA
CGCTGATGCTAGATAGACGCTTTCCAATTGTCCCGGTTGACTCATCAGCAGCAAGAATACCTTTTCCAGGTGTGCCGATGTAGGCGGCATTGGCGATAAG
CTCATCTGCAAATTCTCACAAACATCAGTACCAACAAAACTATAAACCTTACAACAATAATCTAATTAATCAATAAATACCCAAAATTAAACATGATTAG
ACATAAACAAAATCAAATTATGAACAACATAGATCATCAACATTCAACAGTGATCTCAGATTTATAAAGTAAATAACTTATACCTTAAATAGATCTACTT
GATTTTATTTTCAGTCTAAAATTCCGTGATTTACAATTTTAAAACATTCAAACATTATATGAAAACTGTGATATAGATTTAACAAGCTAAACTTAAAACC
CTTATAAGGATCTGATGTGACATGACAACATAGAAACGAATAATTCCAATAAATAATCATAAAAAAAGTTAGATCTGAAATCAACAAACACTAAACCAAA
ACAAACAACTACCGATCCATACAAATAAAATTAAAAAACAAAAATTGAGCAAGATCCAAAAGTGATAACAATAGATCTAAGCAAAACAAAAAAAAAAACA
TAGAAAGTAACGAAGAGAATTGAATTATACCATGGTACTTGCTCTTGAAGTTCGACATGATCGAGGTAGGTTTGTTTTGGAAGAGAACGAAAAAGAGGGT
AGGTTAAGAATAAGG