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Detailed information on CNT30349462


BLAST search results

BLAST vs Swiss-Prot:
sp|P17784|ALFC1_ORYSJ, E-value = 4e-138

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Eragrostis tefOryza sativa34.9727.0191.74242forward
CNT30670698Eragrostis tefSetaria viridis34.5454.4491.63239forward
CNT30522989Eragrostis tefSetaria italica47.2535.290.52327forward
CNT30641234Eragrostis tefNymphaea colorata18.9321.9887.02131forward
CNT30513666Eragrostis tefJuglans regia31.944379.64221forward
CNT30374131Eragrostis tefArabidopsis thaliana26.8837.0580.65186forward
CNT30615958Eragrostis tefSesamum indicum21.5329.9881.21149forward
CNT30282161Eragrostis tefChenopodium quinoa29.3436.3180.79203forward
CNT3021292Eragrostis tefCitrullus lanatus28.4729.3283.25197forward
CNT30636709Eragrostis tefCapsicum annuum30.235.381.34209forward
CNT30222288Eragrostis tefHordeum vulgare40.1765.7287.05278forward
CNT30568685Eragrostis tefActinidia chinensis31.519.4583.03218forward
CNT30552124Eragrostis tefOryza glaberrima80.7860.3787.66559forward
CNT30437501Eragrostis tefAegilops tauschii26.7350.4187.57185forward
CNT30457732Eragrostis tefSaccharum spontaneum98.1250.9890.57679forward
CNT304578Eragrostis tefZea mays54.7768.6691.29379forward
CNT30609114Eragrostis tefGossypium raimondii25.4327.1681.82176forward
CNT30649836Eragrostis tefRosa chinensis26.316.2285.16182forward
CNT30717283Eragrostis tefMalus domestica golden25.4326.2782.95176forward
CNT30720854Eragrostis tefTriticum spelta20.6621.0686.01143forward
CNT30479170Eragrostis tefArabidopsis halleri25.4341.6182.39176forward
CNT30363770Eragrostis tefSorghum bicolor23.5531.2393.87163forward
CNT30154837Eragrostis tefPrunus persica31.9423.9780.09221forward
CNT30433772Eragrostis tefPapaver somniferum47.6923.5580330forward
CNT3026858Eragrostis tefPopulus trichocarpa27.8929.8884.46193forward
CNT30149431Eragrostis tefBrachypodium distachyon28.0340.2591.75194forward
CNT3099714Eragrostis tefOryza rufipogon34.9727.2891.74242forward
CNT30580631Eragrostis tefEchinochloa crusgalli16.4734.6589.47114forward
CNT30113854Eragrostis tefFicus carica35.9835.1281.12249forward
CNT30724887Eragrostis tefLupinus angustifolius47.2524.5578.59327forward

Expression of CNT30349462

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MALGGGLLVSASNLDGTLVDLDAGKDTTLLEDINERLAILGL

>peptide 2 (69 aa)
RRGRSVLVVLHVEALKRLTGSSASLVGTEGSLRVGLTPDKEDRPGLLNILLLASPGLEGAGLKGTAERE*

>peptide 3 (31 aa)
MALRFRVASSSLCPPERKTMAGTAARTTSVT*

>peptide 4 (30 aa)
QERQISTCSPSRGGSQAPHRQQRLPCRYRG*

Sequence

>CNT30349462
CAGGAGAGGCAGATCAGTACTTGTAGTCCTTCACGTGGAGGCTCTCAAGCGCCTCACCGGCAGCAGCGCCTCCCTTGTAGGTACCGAGGGTAGCCTCAGA
GTTGGCCTTACACCTGACAAGGAAGACCGCCCTGGCCTTCTCAACATTCTCCTCCTTGCCAGCCCAGGCCTTGAGGGTGCTGGCCTGAAGGGCACGGCCG
AAAGAGAATGACAGAGTCCACGGCTTCTTTGTGCTGAGCTTGTTCATGGCGTTGAGGTTCAGGGTGGCCTCCTCCTCGCTCTGTCCACCAGAGAGGAAGA
CGATGGCAGGCACGGCAGCAAGGACAACCTCAGTGACGTAAGCACAGCGCTCAATGTCGTGAGGCCCATCAACAAGGATCTCAGGCTCAACAATGGGCAC
CAGACCGTTCTCCTGGCAGATGATGGCATAGCGAGCCAGGCCCTGAGCATTCAGGTCAATGGCAAGCTGGGATGGCTCGTTCGGGCCAATCTTGAGGACA
GCACGCCACTTGGCGAAGCGAGCACCAGCCTCGTAGTACTTGGCGCAGCGCTTGCCAAGGTCATCATGGCCCTGGGTGGTGGTCTCCTTGTCAGTGCCAG
CAACCTCGATGGTACCCTTGTCGACCTTGATGCCGGGAAGGACACCACCCTCCTTGAGGACATCAACGAAAGGCTTGCCATCCTTGGTCTTC