Detailed information on CNT30363770


BLAST search results

BLAST vs Swiss-Prot:
sp|P08440|ALF_MAIZE, E-value = 1e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30158302Sorghum bicolorPistacia vera17.6221.1583.792forward
CNT3014640Sorghum bicolorZea mays31.4246.4694.51164forward
CNT30349462Sorghum bicolorEragrostis tef31.2323.5593.87163forward
CNT30355098Sorghum bicolorLactuca sativa18.9726.7685.8699forward
CNT30433772Sorghum bicolorPapaver somniferum26.639.9286.33139forward
CNT30113854Sorghum bicolorFicus carica23.9517.6386.4125forward

Expression of CNT30363770

Peptides detected in this lncRNA

>peptide 1 (50 aa)
FFLLSEYKLKRANHTQQPTRRQEFQNGHAKRSNSVLVVLDVEALDRSPGR*

>peptide 2 (36 aa)
FFCCPNISSNEQTTLSNLLVGRSSKTGTQREATQYL*

>peptide 3 (51 aa)
MYWRAPGQQKRSSRRARRFSSTFSTLMLERRLPMVPVDSSAARIPLPGVPM*

Sequence

>CNT30363770
TTTTTTTTTGTTGTCCGAATATAAGCTCAAACGAGCAAACCACACTCAGCAACCTACTCGTAGGCAGGAGTTCCAAAACGGGCACGCAAAGAGAAGCAAC
TCAGTACTTGTAGTCCTTGACGTGGAGGCTCTCGACCGTTCTCCTGGCAGATGATGGCATAGCGAGCCAGGCCCTGAGCATTCAGGTCAATGGCAAGCTG
TGATGGCTCATTGGGGCCGATCTTGAGAACAGCACGCCACTTAGCAAAGCGGGCACCGGCCTCGTAGTACTTGGCGCAGCGCTTGCCAAGGACATCGACA
AAAGGCTTGCCATCCTTGGTCTTCTGGTAGAGGGTCTCCTCGAAGAGGATCACACCGCTGATGTACTGGAGGGCACCAGGGCAGCAGAAAAGGAGCTCAC
GGAGGGCACGGCGGTTCTCCTCCACGTTCTCGACATTGATGCTGGAAAGACGCTTGCCAATGGTGCCAGTGGACTCATCAGCAGCAAGGATACCCTTGCC
AGGGGTGCCAATGTAGGCAGCA