« Back to Lolium perenne search


Detailed information on CNT30135152


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671170Lolium perenneSetaria viridis20.0644.9890.77130forward
CNT30522989Lolium perenneSetaria italica47.9933.4890.03311forward
CNT30641283Lolium perenneNymphaea colorata42.4414.0484.36275forward
CNT30282161Lolium perenneChenopodium quinoa37.3543.2983.88242forward
CNT30729011Lolium perenneCorchorus capsularis21.1420.4284.67137forward
CNT30636619Lolium perenneCapsicum annuum20.6817.282.84134forward
CNT30182840Lolium perenneSecale cereale22.0740.8686.01143forward
CNT30222508Lolium perenneHordeum vulgare28.461.7491.3184forward
CNT30564032Lolium perenneActinidia chinensis32.2556.7979.43209forward
CNT3085640Lolium perenneVigna radiata21.7626.581.56141forward
CNT30552330Lolium perenneOryza glaberrima41.236.8390.26267forward
CNT30437900Lolium perenneAegilops tauschii16.0523.7493.27104forward
CNT30612844Lolium perenneArabis alpina23.7723.2380.52154forward
CNT30458863Lolium perenneSaccharum spontaneum49.0722.7688.68318forward
CNT3015043Lolium perenneZea mays39.6652.4587.55257forward
CNT30649836Lolium perenneRosa chinensis42.1324.3379.49273forward
CNT30683148Lolium perenneTriticum urartu28.0933.7786.81182forward
CNT30720854Lolium perenneTriticum spelta21.7620.7786.52141forward
CNT30364112Lolium perenneSorghum bicolor36.5726.9388.61237forward
CNT30355687Lolium perenneLactuca sativa20.9920.5483.09136forward
CNT30370572Lolium perenneOryza glumipatula9.5725.4190.3262forward
CNT30433772Lolium perennePapaver somniferum47.9922.281.03311forward
CNT3026774Lolium perennePopulus trichocarpa32.2525.2179.43209forward
CNT30120586Lolium perenneCitrus clementina13.7326.6588.7689forward
CNT3036222Lolium perenneCucumis melo13.4323.7787.3687forward
CNT30149431Lolium perenneBrachypodium distachyon17.2823.2491.96112forward
CNT3099714Lolium perenneOryza rufipogon2518.2687.65162forward
CNT30113854Lolium perenneFicus carica39.9736.5382.63259forward

Expression of CNT30135152

Peptides detected in this lncRNA

>peptide 1 (58 aa)
PDMITQHIKGFSHCCIKQQNYRTIEQKPAAPIYDTQHLSYRQTSKKLLRYYESEVSYY*

>peptide 2 (72 aa)
MAFRFLVASSSLCPPERKTMAGTAGGTVLWRVRTVYSAMTSGATFLASDPGVTMLGFRRVPSRRTCWSLRAL*

>peptide 3 (29 aa)
MLVVESLVAGSKDNLGHIGTAVNVMRSINK

>peptide 4 (51 aa)
ARHDYSAYKRVFPLLHQAAKLQDDRTKTSCSNLRYAAPELQANIKKTTTVL*

Sequence

>CNT30135152
GCCAGACATGATTACTCAGCATATAAAAGGGTTTTCCCATTGTTGCATCAAGCAGCAAAATTACAGGACGATAGAACAAAAACCAGCTGCTCCAATTTAC
GATACGCAGCACCTGAGTTACAGGCAAACATCAAAAAAACTACTACGGTATTATGAAAGCGAAGTTTCATATTATTAAACGAGGTTCGATATCCGAAGAT
ATATAGGACTCAGAAAACCAAACAATAATACTGGTATGCAGGAAGGCCCAAACGGACCAGCGCCGAAGGCAGATCAGTACTTGTAGTCCTTGACGTGAAG
GCTCTCGGAGGCACCCTCACCCAGGAAGGACAGAGACCACGGCTTCTTGGTCTGGAGCTTGTTCATGGCGTTCAGGTTCTTGGTCGCCTCCTCCTCGCTC
TGTCCACCAGAGAGGAAGACAATGGCAGGCACGGCAGGGGGGACGGTCCTCTGGAGGGTGCGGACGGTGTACTCAGCGATGACCTCAGGGGCAACCTTCT
TGGCGTCAGATCCAGGGGTAACCATGTTGGGCTTCAGGAGGGTACCCTCGAGGAGAACATGCTGGTCGTTGAGAGCCTTGTAGCAGGCAGCAAGGACAAT
CTCGGTCACATAGGCACAGCGGTCAATGTCATGAGGTCCATCAACAAG