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Detailed information on CNT3085829


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Vigna radiataOryza sativa21.989.1584.1582forward
CNT30670698Vigna radiataSetaria viridis29.4925.0682.73110forward
CNT30641283Vigna radiataNymphaea colorata25.474.8583.1695forward
CNT30615958Vigna radiataSesamum indicum38.0728.5780.99142forward
CNT30158302Vigna radiataPistacia vera39.1433.5683.56146forward
CNT30222288Vigna radiataHordeum vulgare36.7332.3981.02137forward
CNT30552359Vigna radiataOryza glaberrima25.4710.2284.2195forward
CNT30145818Vigna radiataMedicago truncatula50.418.5286.17188forward
CNT30612844Vigna radiataArabis alpina45.5825.6481.76170forward
CNT30650515Vigna radiataRosa chinensis57.6427.3584.65215forward
CNT30717283Vigna radiataMalus domestica golden50.1327.9183.42187forward
CNT30359512Vigna radiataLactuca sativa26.2724.2683.6798forward
CNT30433772Vigna radiataPapaver somniferum52.8214.0682.23197forward
CNT30643281Vigna radiataCannabis sativa56.8454.7880.66212forward
CNT3026922Vigna radiataPopulus trichocarpa52.0133.6886.6194forward
CNT3099714Vigna radiataOryza rufipogon21.989.2484.1582forward

Expression of CNT3085829

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PIPTRTSLELFSVLVVINMEALCGALSKL*

>peptide 2 (41 aa)
MARWDQSLARHAIWQIVHLLHSIWHNADQGHPDPEWWFPHRS

Sequence

>CNT3085829
ACCCGATTCCTACCCGCACTAGTCTCGAACTTTTCTCAGTACTTGTAGTTATCAACATGGAGGCTCTCTGCGGCGCCCTCAGCAAGCTTTGAATCACCCT
TGTAGGTTCCAAGAGTTGCCTCTGAGTTAGCCTTGGCTCTTATCAATAAGGATCTCGGGTTCAACAATGGGAACCAACCCATTTTCCTGGCATATGACAG
CATATCTGGCCAAGCCATAGGCATTCTCGTGGATGGAGAGCTCTGATGGCTCGTTGGGACCAATCTTTAGCACGGCACGCCATTTGGCAAATCGTGCACC
TGCTTCATAGTATTTGGCACAACGCTGACCAAGGCCATCCAGACCCTGAGTGGTGGTTTCCCCATCGGTCCCG