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Detailed information on CNT30458863


BLAST search results

BLAST vs Swiss-Prot:
sp|P17784|ALFC1_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONPOPT000956, E-value = 3e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670698Saccharum spontaneumSetaria viridis19.963.3391.73278forward
CNT30522989Saccharum spontaneumSetaria italica37.5156.494.08524forward
CNT30641283Saccharum spontaneumNymphaea colorata32.3623.0782.3452forward
CNT30515901Saccharum spontaneumJuglans regia11.1724.2680.13156forward
CNT30375244Saccharum spontaneumArabidopsis thaliana11.3831.0579.87159forward
CNT30282161Saccharum spontaneumChenopodium quinoa22.0555.182.47308forward
CNT3021376Saccharum spontaneumCitrullus lanatus18.1836.6582.28254forward
CNT30729011Saccharum spontaneumCorchorus capsularis10.2421.3185.31143forward
CNT30158302Saccharum spontaneumPistacia vera12.640.4682.39176forward
CNT30636709Saccharum spontaneumCapsicum annuum14.9635.384.69209forward
CNT30568685Saccharum spontaneumActinidia chinensis22.0527.4882.14308forward
CNT3085640Saccharum spontaneumVigna radiata19.6951.6978.18275forward
CNT30552359Saccharum spontaneumOryza glaberrima29.9244.9589.95418forward
CNT30437900Saccharum spontaneumAegilops tauschii23.9876.4887.46335forward
CNT30612844Saccharum spontaneumArabis alpina10.4522.0281.51146forward
CNT30135152Saccharum spontaneumLolium perenne22.7649.0788.68318forward
CNT30609114Saccharum spontaneumGossypium raimondii18.439.6682.49257forward
CNT30649836Saccharum spontaneumRosa chinensis38.3747.7779.66536forward
CNT30625244Saccharum spontaneumDaucus carota24.5552.1379.01343forward
CNT30479170Saccharum spontaneumArabidopsis halleri12.641.6180.68176forward
CNT30622084Saccharum spontaneumCajanus cajan24.6246.378.49344forward
CNT30154837Saccharum spontaneumPrunus persica40.0960.7477.5560forward
CNT30433772Saccharum spontaneumPapaver somniferum65.2165.0278.81911forward
CNT30571536Saccharum spontaneumVitis vinifera15.5343.3180.18217forward
CNT30643281Saccharum spontaneumCannabis sativa10.4537.7382.19146forward
CNT3026858Saccharum spontaneumPopulus trichocarpa13.3928.9584.49187forward
CNT30120586Saccharum spontaneumCitrus clementina5.9424.8590.3683forward
CNT3036222Saccharum spontaneumCucumis melo5.9422.6885.5483forward
CNT30113854Saccharum spontaneumFicus carica28.3555.8582.58396forward

Expression of CNT30458863

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MALCGGLLVGASNLNGALVNLDAREHTSLIEDINEGLAILGFLVEGLLEEDHTAEVLEGTRGTKEELTKGTAVLLNVLNIDA*

>peptide 2 (81 aa)
MSIKSKQPSSISSELLKPILHVEALRDTLAGSSVTLVCAEGGLRVGLAPGEEGSPGLLHVLLLASPGLEGARLKGTAEREG*

>peptide 3 (72 aa)
MAFRFRVASSSLCPPERKTMAGTAAGTVLWRARTVYSAITSGATFLESEPGVTMLGFRRVPSRRTWCSLRAL*

>peptide 4 (61 aa)
MVLVESLVAGSKDHLRDIGTVLNVMWPIDEDLRLNNWHQTVLLADDGVASKTLSVQVNGKL*

>peptide 5 (48 aa)
MFSTLMLERRLPMVPVDSSAARIPFPGVPMYAAFLMSSSAKQSTNMFS*

>peptide 6 (30 aa)
SILQQRIEQNVAARFTIRTTRLHKINTKKD*

>peptide 7 (29 aa)
MVPLSTLMPGSTPPSLRTSTKGLPSLVFW*

Sequence

>CNT30458863
CAGCATATTACAGCAACGGATAGAACAAAACGTGGCCGCTCGATTTACCATCCGTACGACCAGATTACACAAGATTAACACCAAAAAAGACTAATTAATA
CATGAGCATAAAAAGTAAGCAACCATCATCCATAAGTTCAGAATTATTAAAACCAATCCTTCACGTGGAGGCTCTCCGAGACACCCTCGCCGGCAGCAGC
GTCACCCTTGTATGTGCCGAGGGTGGCCTCCGAGTTGGCCTTGCACCTGGTGAGGAAGGCAGCCCTGGCCTTCTCCACGTTCTCCTCCTTGCCAGCCCAG
GCCTTGAGGGTGCTCGCCTGAAGGGCACGGCCGAACGAGAAGGATAGGGACCACGGCTTCTTGGTGTTGAGCTTGTTCATGGCGTTCAGGTTTAGGGTGG
CCTCCTCCTCACTCTGTCCACCAGAGAGGAAGACGATGGCGGGCACAGCAGCAGGGACAGTCCTCTGGAGGGCACGGACAGTGTACTCAGCGATCACCTC
AGGAGCCACCTTCTTGGAGTCGGAGCCAGGGGTGACCATGTTGGGCTTCAGGAGGGTACCCTCAAGGAGGACATGGTGCTCGTTGAGAGCCTTGTAGCAG
GCAGCAAGGACCATCTCCGTGACATAGGCACAGTGCTCAATGTCATGTGGCCCATCGACGAGGATCTCAGGCTCAACAATTGGCACCAGACCGTTCTCCT
GGCAGATGATGGCGTAGCGAGCAAGACCCTGAGCGTTCAAGTCAATGGCAAGCTGTGATGGCTCGTTAGGGCCGATGTTGAGGACGGCACGCCACTTGGC
AAAGCGAGCACCAGCCTCATAGTACTTGGCGCAGCGCTTGCCAAGGTCATCATGGCCCTGTGTGGTGGTCTCCTTGTTGGTGCCAGCAACCTCAATGGTG
CCCTTGTCAACCTTGATGCCAGGGAGCACACCTCCCTCATTGAGGACATCAACGAAGGGCTTGCCATCCTTGGTTTTCTGGTAGAGGGTCTCCTCGAAGA
GGATCACACCGCTGAGGTACTGGAGGGCACCAGGGGCACAAAAGAGGAGCTCACGAAGGGCACGGCGGTTCTCCTCAATGTTCTCAACATTGATGCTTGA
AAGGCGCTTGCCAATGGTGCCCGTGGACTCATCAGCAGCAAGGATACCCTTTCCAGGGGTGCCAATGTATGCGGCATTCTTGATGAGCTCATCTGCAAAA
CAATCCACAAATATGTTTAGCTAACAAGCAGTAGATATTGATTACTCAGATCACAATCAATAAACACAGTTCATGTAACAAATATATATTAGCTAACTAA
TACTGACGTGTTGGAAGTATAACTCTCCAGCACTATTGAAACATAGAACTGTGTAACATTGTGACCAAAGAAATTGAGAATACATTGATGACACAAT