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Detailed information on CNT30690595


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5N725|ALFC3_ORYSJ, E-value = 4e-96

BLAST vs NONCODE:
NONORUT000701, E-value = 1e-122

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670698Oryza sativaSetaria viridis31.1463.5591.4279forward
CNT30522989Oryza sativaSetaria italica33.7132.5188.08302forward
CNT30641283Oryza sativaNymphaea colorata21.329.7582.2191forward
CNT30615958Oryza sativaSesamum indicum13.9525.1584125forward
CNT30282161Oryza sativaChenopodium quinoa31.2550.0980280forward
CNT30158302Oryza sativaPistacia vera19.6440.4681.25176forward
CNT30636709Oryza sativaCapsicum annuum22.9934.882.04206forward
CNT30222288Oryza sativaHordeum vulgare41.5287.9486.56372forward
CNT30564031Oryza sativaActinidia chinensis21.4328.481.25192forward
CNT3085829Oryza sativaVigna radiata9.1521.9884.1582forward
CNT30552124Oryza sativaOryza glaberrima48.3346.7699.54433forward
CNT30437900Oryza sativaAegilops tauschii34.4970.5586.41309forward
CNT30457732Oryza sativaSaccharum spontaneum47.6632.0690.16427forward
CNT304578Oryza sativaZea mays33.3754.1789.3299forward
CNT30609114Oryza sativaGossypium raimondii14.5120.0682.31130forward
CNT3066783Oryza sativaLeersia perrieri23.8865.6493.46214forward
CNT30649836Oryza sativaRosa chinensis31.4725.1379.79282forward
CNT30625244Oryza sativaDaucus carota14.7320.0682.58132forward
CNT30683148Oryza sativaTriticum urartu19.9833.2189.94179forward
CNT30720854Oryza sativaTriticum spelta20.226.6688.95181forward
CNT30349462Oryza sativaEragrostis tef27.0134.9791.74242forward
CNT30364112Oryza sativaSorghum bicolor27.4627.9589.43246forward
CNT30355098Oryza sativaLactuca sativa18.9745.9579.41170forward
CNT30370572Oryza sativaOryza glumipatula6.9225.4187.162forward
CNT30154837Oryza sativaPrunus persica20.3119.7481.32182forward
CNT30433772Oryza sativaPapaver somniferum44.7528.6278.3401forward
CNT30571536Oryza sativaVitis vinifera11.2720.1683.17101forward
CNT3026858Oryza sativaPopulus trichocarpa23.2132.284.62208forward
CNT3099714Oryza sativaOryza rufipogon45.0945.55100404forward
CNT30579988Oryza sativaEchinochloa crusgalli30.9286.2989.17277forward
CNT30113854Oryza sativaFicus carica32.8141.4782.31294forward

Expression of CNT30690595

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MPGRTPPSLRTSTKGLPSLVFWYRVSSKRITPLRCWRAPGVVKSSSRRERRFSSTFSTLMLAKRLPMVPVDSSAARIPLPGV

>peptide 2 (68 aa)
MKAFCAFTTFSVLPPQALSVLCWRARPKEKDRAHGFLVLSLFMALRFTVASSSLCPPERKTMAQRSMS*

>peptide 3 (35 aa)
MRAIDKDLRSMESCDGSLGPILRTARHLAKRAPAS*

Sequence

>CNT30690595
CACAGGTTCAGATTATTGCGACAAAAGTTTTTGATACCCGTAAGATTGGACGCTTGATAGCCAAACCACACTCAGAACCCTAAATATGCATACGGAGGAT
GTCCAATCGGATCTTCAGCCACCACCAGAAGCAGATCAGTACTTGTAGTCCTTGACGTGAAGGCTCTCAGAGGCACCCTCGCCGAGCACAGCATCACCCT
GGTATGTACCAAGGGTAGCCTCAGAGTTGGCCTTGCACCTGGTGATGAAGGCCTTCTGCGCCTTCACCACGTTCTCCGTCTTGCCGCCCCAGGCCTTGAG
CGTGCTCTGCTGGAGAGCACGGCCGAAGGAGAAGGACAGAGCCCACGGCTTCTTGGTGCTGAGCTTGTTCATGGCGTTGAGGTTCACGGTCGCCTCCTCC
TCGCTCTGTCCACCAGAGAGGAAGACAATGGCACAGCGCTCAATGTCATGAGAGCCATCGACAAGGATCTCAGGTCAATGGAAAGCTGCGATGGCTCGTT
GGGGCCAATCTTGAGGACAGCACGCCACTTGGCGAAGCGGGCACCGGCCTCGTAGTACTTGGCGCAACGCTTGCCAAGATCATCGTGGCCCTGGGTGGTG
GTCTCTTTGTTGGTGCCGGCAACCTCAACGGTACCCTTGTCAACCTTGATGCCAGGGAGGACACCACCCTCCTTGAGGACATCGACGAAGGGCTTGCCGT
CCTTGGTCTTCTGGTACAGGGTCTCCTCGAAGAGGATCACACCACTTAGGTGCTGGAGGGCACCAGGGGTGGTGAAGAGCAGCTCGCGGAGAGAGCGGCG
GTTCTCCTCAACGTTCTCGACATTGATGCTGGCAAAGCGCTTGCCAATGGTGCCAGTGGACTCATCTGCAGCAAGGATACCCTTGCCAGGAGTGCC