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Detailed information on CNT30222288


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Hordeum vulgareOryza sativa87.9441.5286.56372forward
CNT30670698Hordeum vulgareSetaria viridis63.3661.0587.31268forward
CNT30513666Hordeum vulgareJuglans regia43.535.882.07184forward
CNT30158302Hordeum vulgarePistacia vera38.5337.4785.89163forward
CNT3085829Hordeum vulgareVigna radiata32.3936.7381.02137forward
CNT30552359Hordeum vulgareOryza glaberrima36.6416.6790.97155forward
CNT30437900Hordeum vulgareAegilops tauschii62.8860.7396.24266forward
CNT30612844Hordeum vulgareArabis alpina33.8121.5781.12143forward
CNT30457732Hordeum vulgareSaccharum spontaneum10031.7687.94423forward
CNT304578Hordeum vulgareZea mays80.1461.4187.02339forward
CNT3066783Hordeum vulgareLeersia perrieri40.1952.1591.18170forward
CNT30650515Hordeum vulgareRosa chinensis42.3222.7783.8179forward
CNT30717283Hordeum vulgareMalus domestica golden46.5729.481.73197forward
CNT30683148Hordeum vulgareTriticum urartu32.3925.4299.27137forward
CNT30349462Hordeum vulgareEragrostis tef65.7240.1787.05278forward
CNT30364112Hordeum vulgareSorghum bicolor39.2418.8691.57166forward
CNT30154837Hordeum vulgarePrunus persica54.3724.9580.87230forward
CNT30433772Hordeum vulgarePapaver somniferum51.5415.5681.19218forward
CNT3026858Hordeum vulgarePopulus trichocarpa36.6423.9984.52155forward
CNT30149431Hordeum vulgareBrachypodium distachyon22.9320.1290.7297forward
CNT3099714Hordeum vulgareOryza rufipogon83.4539.886.4353forward
CNT30579988Hordeum vulgareEchinochloa crusgalli53.1970.0988.44225forward

Expression of CNT30222288

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MVPLSTLMPGRTLPSLRMSTKGLPPLVLW*

Sequence

>CNT30222288
TCCTGGCAGATGATGGCATAACGAGCCAGACCCTGAGCATTCTGGTTGATAGAAAGCTGTGATGGCTCGGTTGGGCCAATCTTGAGAACGGCACGCCACT
TGGCAAAGCGGGCACCAGCCTCGTAGTACTTGGCGCAGCGCTTGCCAAGGTCATCAAAGCCCTGGGTGGTGGTCTCACCATTGGTTCCAGCGAGCTCGAT
GGTACCCTTGTCCACCTTGATGCCGGGGAGGACGTTGCCCTCCTTGAGGATGTCGACGAAGGGCTTGCCACCCTTGGTGCTCTGGTAGAGGGTCTCCTCG
AAGAGGATCACACCGCTGAGGTACTGGAGGGCACCAGGGGTGCAGAAGAGGAGCTCACGGAGGGCACGGCGGTTGTCCTCGACGTTCTCAACATTGATGC
TGGCGAAGCGCTTGCCGATGGTG