Detailed information on CNT3099714


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000701, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Oryza rufipogonOryza sativa45.5545.09100404forward
CNT30670698Oryza rufipogonSetaria viridis31.4563.5591.4279forward
CNT30158302Oryza rufipogonPistacia vera19.8440.4681.25176forward
CNT30222288Oryza rufipogonHordeum vulgare39.883.4586.4353forward
CNT3085829Oryza rufipogonVigna radiata9.2421.9884.1582forward
CNT30552330Oryza rufipogonOryza glaberrima40.5949.6699.44360forward
CNT30437900Oryza rufipogonAegilops tauschii27.7356.1685.37246forward
CNT30457732Oryza rufipogonSaccharum spontaneum40.9227.2589.53363forward
CNT30135152Oryza rufipogonLolium perenne18.262587.65162forward
CNT304578Oryza rufipogonZea mays33.7154.1789.3299forward
CNT3066783Oryza rufipogonLeersia perrieri17.0246.3292.72151forward
CNT30683148Oryza rufipogonTriticum urartu13.0821.5289.66116forward
CNT30349462Oryza rufipogonEragrostis tef27.2834.9791.74242forward
CNT30364112Oryza rufipogonSorghum bicolor20.5220.6888.46182forward
CNT30355098Oryza rufipogonLactuca sativa19.1745.9579.41170forward
CNT30154837Oryza rufipogonPrunus persica20.5219.7481.32182forward
CNT30433772Oryza rufipogonPapaver somniferum22.5514.2881200forward
CNT3026858Oryza rufipogonPopulus trichocarpa23.4532.284.62208forward
CNT30120586Oryza rufipogonCitrus clementina9.8126.0586.2187forward
CNT30579988Oryza rufipogonEchinochloa crusgalli23.7965.7388.63211forward

Expression of CNT3099714

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MPGRTPPSLRTSTKGLPSLVFWYRVSSKRITPLRCWRAPGVVKSSSRRERRFSSTFSTLML

>peptide 2 (59 aa)
MVFVEGLVAGSEDLLGDIGTALNVMRAIDKDLRSMESCDGSLGPILRTARHLAKRAPAS*

>peptide 3 (60 aa)
MHYGGCPIGSSATTRGRSVLVVLDVKALRGETFFDSDPGVTMLGFRREPSRRTWCSLRAL*

Sequence

>CNT3099714
GCGGGAACCGAGACACAGCAAAACGCCATATAGGTAAAAGGTTTAATTAACATAGGAGTACAGCAGAAAATAACAATAAAAAGATAGCATGGAATTAAAG
CCGCTGCTCCAATTTACCATACGCAGCATTTGATTACAGGAATACCAAAAAACTACTACCGATGACAGGTATTAATTATTAAAAAGCACAGGTTCAGATT
ATTGCGACAAAAGTTTTTGATACCCGTAAGATTGGACGCTTGATAGCCAAACCACACTCAGAACCCTAAATATGCATTATGGAGGATGTCCAATCGGATC
TTCAGCCACCACCAGAGGCAGATCAGTACTTGTAGTCCTTGACGTGAAGGCTCTCAGAGGGGAAACCTTCTTCGATTCAGATCCTGGGGTGACCATGTTG
GGCTTCAGGAGGGAACCCTCCAGGAGGACATGGTGTTCGTTGAGGGCCTTGTAGCAGGCAGCGAGGACCTTCTCGGTGACATAGGCACAGCGCTCAATGT
CATGAGAGCCATCGACAAGGATCTCAGGTCAATGGAAAGCTGCGATGGCTCGTTGGGGCCAATCTTGAGGACAGCACGCCACTTGGCGAAGCGGGCACCG
GCCTCGTAGTACTTGGCGCAACGCTTGCCAAGATCATCGTGGCCCTGGGTGGTGGTCTCTTTGTTGGTGCCGGCAACCTCAACGGTACCCTTGTCAACCT
TGATGCCAGGGAGGACACCACCCTCCTTGAGGACATCGACGAAGGGCTTGCCGTCCTTGGTCTTCTGGTACAGGGTCTCCTCGAAGAGGATCACACCACT
TAGGTGCTGGAGGGCACCAGGGGTGGTGAAGAGCAGCTCGCGGAGAGAGCGGCGGTTCTCCTCAACGTTCTCGACATTGATGCTGGC