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Detailed information on CNT30720854


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJQ9|ALFC6_ARATH, E-value = 5e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Triticum speltaOryza sativa26.6620.288.95181forward
CNT30670509Triticum speltaSetaria viridis22.534591.5153forward
CNT30522989Triticum speltaSetaria italica31.3722.9387.79213forward
CNT30641283Triticum speltaNymphaea colorata21.87.5588.51148forward
CNT30729011Triticum speltaCorchorus capsularis26.3626.6881.56179forward
CNT30182840Triticum speltaSecale cereale41.3880.2983.63281forward
CNT30222685Triticum speltaHordeum vulgare20.6247.6296.43140forward
CNT30552124Triticum speltaOryza glaberrima31.0822.7984.36211forward
CNT30437900Triticum speltaAegilops tauschii28.7244.5295.9195forward
CNT30457732Triticum speltaSaccharum spontaneum28.1314.3491.1191forward
CNT30135152Triticum speltaLolium perenne20.7721.7686.52141forward
CNT3015043Triticum speltaZea mays18.725.9288.98127forward
CNT30609114Triticum speltaGossypium raimondii19.4420.3783.33132forward
CNT3066783Triticum speltaLeersia perrieri27.6957.6790.43188forward
CNT30683148Triticum speltaTriticum urartu28.4235.8195.34193forward
CNT30349462Triticum speltaEragrostis tef21.0620.6686.01143forward
CNT30479170Triticum speltaArabidopsis halleri19.1530.7380.77130forward
CNT30364112Triticum speltaSorghum bicolor28.1321.790.05191forward
CNT30433772Triticum speltaPapaver somniferum25.9212.5682.39176forward
CNT30571536Triticum speltaVitis vinifera14.8720.1684.16101forward
CNT3026774Triticum speltaPopulus trichocarpa29.0123.7680.71197forward
CNT30149185Triticum speltaBrachypodium distachyon13.2524.1393.3390forward
CNT30579988Triticum speltaEchinochloa crusgalli26.856.793.41182forward
CNT30113854Triticum speltaFicus carica29.0127.7979.7197forward

Expression of CNT30720854

SRR9114152: 1.61 RPKM

Peptides detected in this lncRNA

>peptide 1 (56 aa)
NRATQDMYSAYNRFYPLYKQQNYTTIVEQKPPLRFTIRSTRVTGYSTPKTKLPKLF*

Sequence

>CNT30720854
AATAGAGCAACTCAAGACATGTACTCAGCATATAACAGGTTTTACCCATTGTATAAGCAGCAAAATTACACGACCATAGTAGAACAAAAACCACCGCTCC
GATTTACGATACGCAGCACCCGAGTAACAGGGTATTCGACTCCAAAAACGAAACTACCTAAGCTATTTTGAGAGCACAAGTTCCATACTAGGTTCGATAT
CCGAAGGATATATCAAGACTCTGAAAACCAAACGATAATACTGGTAAGCAGGACACCCAAACAGGCCACCGCACCGAAGGCAGATCAATACTTGTAGTTC
TTGACGTGGAGGCTCTCAGAGGCCCCCTCGCCGAGGGTGGCATCGCCCTTGTAGGTGCCGAGGGTGGCCTCAGAGTTGGCCTTGCACCTCACCAGGAACG
CCTTCCTGGCCTTCTCCTCGTTCTCCACCTTGCCAGCCCAGGCCTTGAGGGTGCTCTGCTGGAGGGCACGCCCGAAGGAGAAGGACAGGGTCTCCTCAAA
GAGGATCACACCACTGAGGTACTGGAGGGCTCCAGGGGTGCAGAAGAGGAGCTCACGGAGGGCACGGCGGTTGTCCTCAACATTCTCAACATTGATGCTG
GCAAAGCGCTTGCCGATGGTGCCGGTGGACTCGTCGGCAGCAAGGATACCCTTGCCGGGGGTGCCAATGTAGGCAGCGT