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Detailed information on CNT30282161


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Chenopodium quinoaOryza sativa50.0931.2580280forward
CNT30671170Chenopodium quinoaSetaria viridis15.9230.886.5289forward
CNT30522989Chenopodium quinoaSetaria italica41.6825.0882.4233forward
CNT30374848Chenopodium quinoaArabidopsis thaliana19.3224.2781.48108forward
CNT30615958Chenopodium quinoaSesamum indicum29.8733.684.43167forward
CNT3021292Chenopodium quinoaCitrullus lanatus27.7323.0783.87155forward
CNT30729011Chenopodium quinoaCorchorus capsularis21.2917.7384.87119forward
CNT30636709Chenopodium quinoaCapsicum annuum27.5526.0185.06154forward
CNT30222508Chenopodium quinoaHordeum vulgare40.9776.8581.22229forward
CNT30564032Chenopodium quinoaActinidia chinensis42.2264.1380.08236forward
CNT3085859Chenopodium quinoaVigna radiata27.9132.5782.69156forward
CNT30552124Chenopodium quinoaOryza glaberrima50.0930.2480.36280forward
CNT30612844Chenopodium quinoaArabis alpina36.3130.6279.8203forward
CNT30458863Chenopodium quinoaSaccharum spontaneum55.122.0582.47308forward
CNT30135152Chenopodium quinoaLolium perenne43.2937.3583.88242forward
CNT3015043Chenopodium quinoaZea mays42.448.3781.01237forward
CNT30609114Chenopodium quinoaGossypium raimondii21.6518.6785.95121forward
CNT30649836Chenopodium quinoaRosa chinensis48.1223.9881.41269forward
CNT30625244Chenopodium quinoaDaucus carota49.1941.7981.09275forward
CNT30349462Chenopodium quinoaEragrostis tef36.3129.3480.79203forward
CNT30364112Chenopodium quinoaSorghum bicolor22.914.5585.94128forward
CNT30622084Chenopodium quinoaCajanus cajan51.5238.7679.17288forward
CNT30154837Chenopodium quinoaPrunus persica37.3922.6779.9209forward
CNT30433772Chenopodium quinoaPapaver somniferum54.0321.5682.12302forward
CNT30571536Chenopodium quinoaVitis vinifera36.3140.5280.3203forward
CNT3026774Chenopodium quinoaPopulus trichocarpa35.62480.9199forward
CNT30120586Chenopodium quinoaCitrus clementina17.8929.9484100forward
CNT3036222Chenopodium quinoaCucumis melo23.4335.7982.44131forward
CNT30113854Chenopodium quinoaFicus carica65.351.4879.73365forward

Expression of CNT30282161

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MAGQRTKLGLVFVVLDVKALRGISSSSTTLVFTKSSLGVGLSPSEEDLLGLWHILFLA*

>peptide 2 (69 aa)
MALRLRVASSSLCPPDKNMTPGTAGGTVLCRVRTVYSAITSGATFLLSDPGVTMFGFKRVPSRRTWWSLR

>peptide 3 (29 aa)
MPSRYSAEVHVRMRKIESMASWFEACSWR*

>peptide 4 (39 aa)
VTKDSNTPLLRLGRPSQGVKKKTRNLLQKRWQDNEQNLA*

Sequence

>CNT30282161
GTCACTAAAGACAGCAACACACCGCTTCTAAGATTAGGGCGCCCTTCACAGGGAGTAAAAAAAAAAACTCGAAATTTACTGCAGAAACGATGGCAGGACA
ACGAACAAAACTTGGCTTAGTATTTGTAGTCCTTGACGTGAAGGCTCTCAGAGGCATCAGCTCCTCCAGCACCACCCTGGTATTTACCAAGAGTAGCCTC
GGAGTTGGCCTTAGCCCTAGCGAGGAAGACCTCCTGGGCCTTTGGCACATTCTCTTCCTTGCCTGACCATGCCTTCAAGGTACTCTGCTGAAGTGCACGT
CCGTATGAGAAAGATAGAGTCCATGGCTTCTTGGTTTGAAGCTTGTTCATGGCGTTGAGGTTGAGGGTTGCTTCCTCCTCACTCTGTCCACCAGACAAGA
ACATGACTCCGGGAACAGCTGGGGGAACAGTCCTCTGCAGGGTACGGACGGTGTACTCAGCAATCACCTCAGGGGCAACCTTCTTACTCTCTGATCCAGG
GGTAACCATGTTTGGCTTCAAGAGGGTACCCTCAAGGAGAACATGGTGGTCATTGAGGG