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Detailed information on CNT30683148


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Triticum urartuOryza sativa33.2119.9889.94179forward
CNT30670509Triticum urartuSetaria viridis32.2851.1891.95174forward
CNT30641283Triticum urartuNymphaea colorata35.999.984.54194forward
CNT30515901Triticum urartuJuglans regia23.9320.0680.62129forward
CNT30182840Triticum urartuSecale cereale44.969.1496.69242forward
CNT30222288Triticum urartuHordeum vulgare25.4232.3999.27137forward
CNT30145818Triticum urartuMedicago truncatula29.1315.4779.62157forward
CNT30437900Triticum urartuAegilops tauschii38.0346.897.56205forward
CNT30457732Triticum urartuSaccharum spontaneum38.5915.6292.79208forward
CNT30135152Triticum urartuLolium perenne51.5842.983.81278forward
CNT3066783Triticum urartuLeersia perrieri35.2558.2891.58190forward
CNT30720854Triticum urartuTriticum spelta35.8128.4295.34193forward
CNT30479170Triticum urartuArabidopsis halleri28.235.9382.89152forward
CNT30364112Triticum urartuSorghum bicolor35.8121.9392.75193forward
CNT30355098Triticum urartuLactuca sativa18.1826.4986.7398forward
CNT30433772Triticum urartuPapaver somniferum27.0910.4285.62146forward
CNT3099714Triticum urartuOryza rufipogon21.5213.0889.66116forward
CNT30580631Triticum urartuEchinochloa crusgalli38.5963.2292.31208forward
CNT30113854Triticum urartuFicus carica25.619.4685.51138forward

Expression of CNT30683148

Peptides detected in this lncRNA

>peptide 1 (81 aa)
TKQEKVTEHMCTRMRFEHSMSRKITGPWNKNLLQYTIRSTRFPGYFNSKKKLLRYYENTSSILLKTMFDIRGYIRTQKTKQ*

>peptide 2 (29 aa)
MEQKPAPIYDTQHPISRVLQLQKETTTVL*

>peptide 3 (39 aa)
MILVSGTPKRATAPKADRSVLVVLDVEALRGSPRRGSHR*

Sequence

>CNT30683148
GAACAAAGCAAGAAAAGGTGACGGAACACATGTGTACTCGCATGAGGTTTGAACATTCTATGAGCAGGAAAATTACAGGACCATGGAACAAAAACCTGCT
CCAATATACGATACGCAGCACCCGATTTCCAGGGTACTTCAACTCCAAAAAGAAACTACTACGGTATTATGAAAACACAAGTTCCATATTATTAAAAACG
ATGTTCGATATCCGAGGATATATCAGGACTCAGAAAACCAAACAATGATACTGGTAAGCGGGACGCCCAAACGGGCCACAGCTCCGAAGGCAGATAGATC
AGTACTTGTAGTCCTTGACGTGGAGGCTCTCAGAGGGTCTCCTCGAAGAGGATCACACCGCTGAGGTACTGGAGGGCACCAGGGGTGCAGAAGAGGAGCT
CACGGAGGGCACGGCGGTTGTCCTCAACGTTCTCAACATTGATGCTGGCGAAGCGCTTGCCGATGGTGCCGGTGGACTCATCAGCAGCGAGGATACCCTT
GCCAGGGGTGCCAATGTAGGCAGCGTTCTTGATGAGCTC