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Detailed information on CNT3036222


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670785Cucumis meloSetaria viridis18.3126.5985.0767forward
CNT30522989Cucumis meloSetaria italica22.688.9385.5483forward
CNT30513666Cucumis meloJuglans regia40.4428.7984.46148forward
CNT30375244Cucumis meloArabidopsis thaliana33.0623.6380.99121forward
CNT30615958Cucumis meloSesamum indicum31.6923.3486.21116forward
CNT30282161Cucumis meloChenopodium quinoa35.7923.4382.44131forward
CNT3021292Cucumis meloCitrullus lanatus29.7816.2288.99109forward
CNT30729011Cucumis meloCorchorus capsularis47.5425.9382.18174forward
CNT30526127Cucumis meloPhaseolus vulgaris21.3116.4984.6278forward
CNT30493761Cucumis meloOlea europaea26.7836.788.7898forward
CNT30636619Cucumis meloCapsicum annuum45.0821.1887.88165forward
CNT30222685Cucumis meloHordeum vulgare25.1431.2982.6192forward
CNT30564033Cucumis meloActinidia chinensis26.7818.6782.6598forward
CNT3085640Cucumis meloVigna radiata47.2732.5282.66173forward
CNT30458863Cucumis meloSaccharum spontaneum22.685.9485.5483forward
CNT30135152Cucumis meloLolium perenne23.7713.4387.3687forward
CNT30609114Cucumis meloGossypium raimondii31.1517.5985.09114forward
CNT30649836Cucumis meloRosa chinensis45.0814.7182.42165forward
CNT30717283Cucumis meloMalus domestica golden31.1517.0185.09114forward
CNT30625244Cucumis meloDaucus carota29.2316.2684.11107forward
CNT30364112Cucumis meloSorghum bicolor21.869.0983.7580forward
CNT30622084Cucumis meloCajanus cajan28.9614.2784.91106forward
CNT30355687Cucumis meloLactuca sativa29.5116.3183.33108forward
CNT30154837Cucumis meloPrunus persica43.7217.3586.25160forward
CNT30433772Cucumis meloPapaver somniferum40.7110.6481.88149forward
CNT30571536Cucumis meloVitis vinifera25.9618.9688.4295forward
CNT3026774Cucumis meloPopulus trichocarpa44.2619.5480.86162forward
CNT30120586Cucumis meloCitrus clementina37.9841.6284.17139forward
CNT30149185Cucumis meloBrachypodium distachyon22.6822.2583.1383forward
CNT30113854Cucumis meloFicus carica43.4422.4386.79159forward
CNT30724801Cucumis meloLupinus angustifolius30.68.9582.14112forward

Expression of CNT3036222

Peptides detected in this lncRNA

>peptide 1 (81 aa)
VGLAPYEQSSLSLGDVFILSGPCLESTLLQSTSKGERKRPRLLPLEFVHGIKVDAGTAAGTVLCRARTVCSAITSGATFAD*

>peptide 2 (71 aa)
MFSSFPAHALRVLCCRARPKEKERDHGFFPLSLFMALRLTPELQQEQFSVGQGRCARQSLLVQPLQIEIQG*

Sequence

>CNT3036222
GTTGGCCTTGCACCTTACGAGCAAAGCAGCCTGAGCCTTGGGGATGTTTTCATCCTTTCCGGCCCATGCCTTGAGAGTACTCTGCTGCAGAGCACGTCCA
AAGGAGAAAGAAAGAGACCACGGCTTCTTCCCCTTGAGTTTGTTCATGGCATTAAGGTTGACGCCGGAACTGCAGCAGGAACAGTTCTCTGTAGGGCAAG
GACGGTGTGCTCGGCAATCACTTCTGGTGCAACCTTTGCAGATTGAGATCCAGGGGTAACCATGTTGGGCTTCAACAAGGTTCCTTCAAGGAGAACGTGG
TGGTCATTTAGAGCTTTGTAGCAGGCAGCAAGAACACGTTCAGTTACGTCAGCACACTTCTTGATG