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Detailed information on CNT30479170


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LF98|ALFC8_ARATH, E-value = 5e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675100Arabidopsis halleriSetaria viridis15.628.786.3666forward
CNT30641283Arabidopsis halleriNymphaea colorata27.665.9783.76117forward
CNT30374131Arabidopsis halleriArabidopsis thaliana61.2351.5986.49259forward
CNT30636619Arabidopsis halleriCapsicum annuum24.8213.4889.52105forward
CNT30145818Arabidopsis halleriMedicago truncatula37.1215.4787.9157forward
CNT30437501Arabidopsis halleriAegilops tauschii35.9341.4282.24152forward
CNT3074945Arabidopsis halleriBrassica juncea57.2126.0883.47242forward
CNT30612844Arabidopsis halleriArabis alpina59.137.7191.2250forward
CNT30458863Arabidopsis halleriSaccharum spontaneum41.6112.680.68176forward
CNT30609114Arabidopsis halleriGossypium raimondii20.0913.1287.0685forward
CNT3066783Arabidopsis halleriLeersia perrieri34.0444.1781.94144forward
CNT30649836Arabidopsis halleriRosa chinensis50.8319.1680215forward
CNT30717283Arabidopsis halleriMalus domestica golden53.1933.5880.89225forward
CNT30683148Arabidopsis halleriTriticum urartu35.9328.282.89152forward
CNT30720854Arabidopsis halleriTriticum spelta30.7319.1580.77130forward
CNT30349462Arabidopsis halleriEragrostis tef41.6125.4382.39176forward
CNT30364112Arabidopsis halleriSorghum bicolor31.9115.3482.22135forward
CNT30355098Arabidopsis halleriLactuca sativa24.5928.1187.5104forward
CNT30154837Arabidopsis halleriPrunus persica54.1424.8481.22229forward
CNT30433772Arabidopsis halleriPapaver somniferum33.3310.0685.82141forward
CNT30643281Arabidopsis halleriCannabis sativa52.2557.1180.54221forward
CNT3026774Arabidopsis halleriPopulus trichocarpa52.7226.981.61223forward
CNT30580631Arabidopsis halleriEchinochloa crusgalli22.4628.8885.2695forward
CNT30113854Arabidopsis halleriFicus carica37.3522.2881.65158forward
CNT30724887Arabidopsis halleriLupinus angustifolius53.1916.8981.33225forward

Expression of CNT30479170

Peptides detected in this lncRNA

>peptide 1 (34 aa)
QEHAQSQQHTSGCHGIHQLGSQAQQWVQDRSLGR*

>peptide 2 (41 aa)
RTRSVTAAHFWMSWDPSTRISGSTMGTRPFSWQITAYLANP*

Sequence

>CNT30479170
CAAGAACACGCTCAGTCACAGCAGCACACTTCTGGATGTCATGGGATCCATCAACTAGGATCTCAGGCTCAACAATGGGTACAAGACCGTTCTCTTGGCA
GATAACAGCGTATCTAGCTAATCCGTAAGCGTTCTCATGGATGGATAGCTCAGATGGCTCGTTCTCGCCGATCTTGAGGACTGCACGCCACTTGGCGAAA
CGAGCACCAGCTTCGTAGTACTTCTTGCATCGGTCACCAAGACCGTCAAGACCTTGAGTGGAAGAGCACCAGGGGCGGTGAAAAGAAGCTCACGGAGGAT
ACGTCTGTTGGTCTCAACGTTCTCAACGTTGATGCTAGCTAGACGCTTTCCGATGGTACCAGTGGACTCATCAGCAGCCAAAATACCTTTTCCAGGTGTG
CCGATGTAGGCAGCGTTGGCGAT