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Detailed information on CNT30374131


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJQ9|ALFC6_ARATH, E-value = 2e-74

BLAST vs NONCODE:
NONATHT001602, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675100Arabidopsis thalianaSetaria viridis12.5527.3993.6563forward
CNT30513666Arabidopsis thalianaJuglans regia21.7121.2182.57109forward
CNT3021292Arabidopsis thalianaCitrullus lanatus22.5116.8283.19113forward
CNT30145818Arabidopsis thalianaMedicago truncatula23.7111.7287.39119forward
CNT3074945Arabidopsis thalianaBrassica juncea55.9830.2883.99281forward
CNT30612844Arabidopsis thalianaArabis alpina48.2136.583.47242forward
CNT30457732Arabidopsis thalianaSaccharum spontaneum37.0513.9681.72186forward
CNT304578Arabidopsis thalianaZea mays37.0533.781.72186forward
CNT30625244Arabidopsis thalianaDaucus carota26.119.9181.68131forward
CNT30349462Arabidopsis thalianaEragrostis tef37.0526.8880.65186forward
CNT30479170Arabidopsis thalianaArabidopsis halleri51.5961.2386.49259forward
CNT30355098Arabidopsis thalianaLactuca sativa28.6938.9284.03144forward
CNT30154837Arabidopsis thalianaPrunus persica66.7336.3380335forward
CNT30433772Arabidopsis thalianaPapaver somniferum28.2910.1486.62142forward
CNT30643281Arabidopsis thalianaCannabis sativa63.9482.9578.82321forward
CNT3026922Arabidopsis thalianaPopulus trichocarpa60.5652.7881.25304forward
CNT30113854Arabidopsis thalianaFicus carica28.8820.4582.76145forward
CNT30724887Arabidopsis thalianaLupinus angustifolius59.1622.381.14297forward

Expression of CNT30374131

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MVITQSLVASCKNTLCHRGTLLNVMRAINKNLRLHNRHKTVLLTNDSIPSQSISVLMDS*

>peptide 2 (50 aa)
FLLARHGDHSEPCSKLQEHALSPRHTSECHESHQQESQAPQSAQDRSPDK*

Sequence

>CNT30374131
GTTCCTTCTAGCAAGACATGGTGATCACTCAGAGCCTTGTAGCAAGCTGCAAGAACACGCTCTGTCACCGCGGCACACTTCTGAATGTCATGAGAGCCAT
CAACAAGAATCTCAGGCTCCACAATCGGCACAAGACCGTTCTCCTGACAAATGACAGCATACCTAGCCAATCCATAAGCGTTCTCATGGATAGCTAACTG
AGATGGCTCATTAACACCAATCTTAAGAACCGCACGCCACTTGGCGAAACGAGCACCAGCCTCGTAGTATTTCTTGCAACGGTCACCAAGACCATCAAGA
CCTTGAGTAGTAGTCTCACCATTGGTTCCAGCAAGGAAGAGCTCCAGGAGTAGTGAAGAGAAGCTCACGAAGAGCACGTCTGTTGGATTCAACGTTCTCA
ACGTTGATGCTAGCGAGACGTTTCCCAATAGTACCAGTTGATTCATCTGCCGCAAGGATACCTTTTCCAGGTGTTCCGATGTAAGCAGCGTTAGCAATCA
GC